Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1410 ATGACTGAGAACATGTTTGACTCCACCCACCAAGGAATGACAAGAAGCTCCTCCTTGTATGGAAGGGATTTCCTTGAGCTAGTAATGGAAAATGGTGAAATTAATGAACAAAGAGGTTCATCAAATAGAACACCAAGTAACCCTTCATATAGAACAAGGTCAAACACAAACACAAACACACCTTCCAAGGATTCTGACTTGAGTTCTTCACATTCACATCAAACCAATGATCAAAATAATTTGCAATTCTCACAATACAAGAAACCAAGAATGGATGATTCATGTAAAGCAGCAGCATCAAACTCAAAGAAACTAAAGTACTTGAGAAAATGTGATAAAAAACCAGCAAAGTTGAACAATTTCTCCAACTTTTTAGTACCTAAAGTGTTCATCAAATCTACCCAGCAAGCAAAAAAATCATCTTTGGCAGAATTGGAGGAGATTGAAGTAGGAAAAGGATCAAATAAACATGTTTCCCTTGTAGCAAGAAGTGATGAGGATCCACCACTTAATGAGAATTCTGATGCTGTTGATCATAACATTGCTATTCTTAAACCGAATCGAAAAACTAATAGTACCTTATATAATGAGCCATTGTTGCTATCTTCTCCTGTATGCTCGCTCGAAGCCTCGAATGATCCGAATTTTTGTATCAAGAAACATGAAGACAGTTATGAATCAACTTATTCTAGTGATAGTAATGGAGAGGCAGAAGCAAAGGAAAAACCATCCCAGGAGGGTAAAAGTATTAAGAGAGGAAGGAATGTAAAGAATCATAATCTATATGAAAAGAAGGGTAGGGATAAAATGAACAAAAAGATGCGTATATTGAAAGAGCTTATACCCAACTGCAATAAGGTGGACAAAGCTTCATTGCTTGATGATGCCATAGACTATCTTAAGAACCTCAAGCTTCAATTACAGATTATGTCAATGGGTAATGGACTTTGCATGCCACAAATGATGTTAACTCAATTATGTGGTGCTATAGGCATTAATCCTTGGAGCATACCTCAATTCACTATTCCACCACCATTGTCTAATATCAAAGACAATTCACTTCAGAATATGTTTGGTAATTTTTCCAACCAAATGCAACAGATTCCAATACCTCAACATGCACCTAATAATTTCATTCCTATGATGATTGAAAACAATTGTTCTACACAACTTGTGCCAACTACCTTCTATTTTCCCACAAATAAAGACGAAAATAAATAA 1221 0.3554 MTENMFDSTHQGMTRSSSLYGRDFLELVMENGEINEQRGSSNRTPSNPSYRTRSNTNTNTPSKDSDLSSSHSHQTNDQNNLQFSQYKKPRMDDSCKAAASNSKKLKYLRKCDKKPAKLNNFSNFLVPKVFIKSTQQAKKSSLAELEEIEVGKGSNKHVSLVARSDEDPPLNENSDAVDHNIAILKPNRKTNSTLYNEPLLLSSPVCSLEASNDPNFCIKKHEDSYESTYSSDSNGEAEAKEKPSQEGKSIKRGRNVKNHNLYEKKGRDKMNKKMRILKELIPNCNKVDKASLLDDAIDYLKNLKLQLQIMSMGNGLCMPQMMLTQLCGAIGINPWSIPQFTIPPPLSNIKDNSLQNMFGNFSNQMQQIPIPQHAPNNFIPMMIENNCSTQLVPTTFYFPTNKDENK 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1410 406 PANTHER TRANSCRIPTION FACTOR PIF3 1 141 IPR044273 GO:0003700|GO:0006355
Lal3g1410 406 PANTHER TRANSCRIPTION FACTOR PIF3 187 394 IPR044273 GO:0003700|GO:0006355
Lal3g1410 406 SMART finulus 260 309 IPR011598 GO:0046983
Lal3g1410 406 MobiDBLite consensus disorder prediction 32 80 - -
Lal3g1410 406 CDD bHLH_AtPIF_like 254 316 - -
Lal3g1410 406 Pfam Helix-loop-helix DNA-binding domain 257 303 IPR011598 GO:0046983
Lal3g1410 406 Gene3D - 251 311 IPR036638 GO:0046983
Lal3g1410 406 MobiDBLite consensus disorder prediction 235 257 - -
Lal3g1410 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 254 303 IPR011598 GO:0046983
Lal3g1410 406 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 141 - -
Lal3g1410 406 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 187 394 - -
Lal3g1410 406 MobiDBLite consensus disorder prediction 34 80 - -
Lal3g1410 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 255 325 IPR036638 GO:0046983
Lal3g1410 406 MobiDBLite consensus disorder prediction 227 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1410 Lal-Chr3 20018893 20023032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1410 20 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 31.627 2.17e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal3g1410 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1410 K12126 - gmx:100804665 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1410 3 20018893 20023032 Lal5g0203 5 1747877 1752019 LSH
Lal3g1410 3 20018893 20023032 Lal13g0563 13 3675188 3677299 PCT
Lal13g0563 13 3675188 3677299 Lal3g1410 3 20018893 20023032 PCT