Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1406 ATGGAAGATGAACATTTACTCATCACTTCTCAAACCATTGAACACCATGATCTACCCTTTCATGCTTCTAAATCCTTCAATGATTTCACCACTTTACAAGAACCACCACAACTCTCAGAAATTCAACCCTTCATTCAAAACCAAAAACAACAACAACCATTGATTCAAAATAAGATTTTTAAGAAAAAACTTGGTCGTCCAAAATCAGCACCTTCTATATTTTCAATGCCACACCTTAAACCAAAGTCACCACAACACTCTAAACCTGATTCATCATCTAGTTCAATTATAAGACAAGGAATTTGTTTACTTTTTATTTATCTTTGTTTTGGTGTTGCAATATATACCTTCAATACCGAACATTTTTCAGGCATTGAAACACACCCTATTATTGATGCGCTTTATTTTTGTATTGTTACTATGTGTACCATAGGTTATGGTGATATAGCACCTTTGACCCCAGTTACTAAAGTTTTTGCTTGTGTTTTTGTGTTGGTGGGTTTTGGTTTTATTGATATACTCCTTAGTGGGCTTGTTAACTATTTTCTGGATATGCAAGAGAACATGATTTTAACAGGGTTAGAAATGAGTGCTCCAATAAGAACTAGACCAAGAACAAGGGAAGGTTTTTCTGCAAGGAATTACATAGTTGATGCTGCAAAAGGGAGAATGAGGATTAGGTTAAAAGTTGGTTTAGCACTTTGTGTTGTGGTTATGTGTATTGGGATTGGAAGTTTTGTGTTGTATTTTGTTGAGGGTTTGGATTGGGTTGATTCTATTTACTTATCAGTTATGTCTGTTACAACTGTTGGGTATGGTGATAGAGCCTTTAAGACCCCTTTTGGGAGGTTATTTGCAGCTATTTGGCTGCTTTTTTCGACGTTGATGGTGGCGAGGGCGTTCTTGTATTTGGCCGAGGCCAGAATCGATCGGAGGCATAGGAGAATGGCCAAGAAGGTTTTGCATAGAGAAATCACTGTTGAGGATTTGCTTGCTGCAGATATCAACAACACTGGTTTCATTAGTAAGTCTGAGTATGTAATTTTCAAGCTGAAAGAGATGGGTAAAATACAGGAAAAAGATATATTGCAAATTTGCGACCAATTCAGGAGGCTCGACCCGACAAACTGCGGGAAGATAACACTACCTCATCTCTTGGAGGGCACATGA 1170 0.3752 MEDEHLLITSQTIEHHDLPFHASKSFNDFTTLQEPPQLSEIQPFIQNQKQQQPLIQNKIFKKKLGRPKSAPSIFSMPHLKPKSPQHSKPDSSSSSIIRQGICLLFIYLCFGVAIYTFNTEHFSGIETHPIIDALYFCIVTMCTIGYGDIAPLTPVTKVFACVFVLVGFGFIDILLSGLVNYFLDMQENMILTGLEMSAPIRTRPRTREGFSARNYIVDAAKGRMRIRLKVGLALCVVVMCIGIGSFVLYFVEGLDWVDSIYLSVMSVTTVGYGDRAFKTPFGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRMAKKVLHREITVEDLLAADINNTGFISKSEYVIFKLKEMGKIQEKDILQICDQFRRLDPTNCGKITLPHLLEGT 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1406 389 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 48 385 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lal3g1406 389 SUPERFAMILY Voltage-gated potassium channels 84 189 - -
Lal3g1406 389 Gene3D - 86 196 - -
Lal3g1406 389 Gene3D - 213 333 - -
Lal3g1406 389 PRINTS Two pore domain K+ channel signature 139 167 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lal3g1406 389 PRINTS Two pore domain K+ channel signature 268 277 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lal3g1406 389 ProSitePatterns EF-hand calcium-binding domain. 334 346 IPR018247 -
Lal3g1406 389 Pfam Ion channel 103 182 IPR013099 -
Lal3g1406 389 Pfam Ion channel 235 306 IPR013099 -
Lal3g1406 389 SUPERFAMILY Voltage-gated potassium channels 221 328 - -
Lal3g1406 389 PANTHER TWO-PORE POTASSIUM CHANNEL 4-RELATED 48 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1406 Lal-Chr3 19979249 19982662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1406 40 386 Ion Channels AT4G01840 62.500 3.33e-156 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1406 K05389 - gmx:100780438 530.406