Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1405 ATGGGTTGTTTCGGCTGTTGTGAAGATGATAATGGGCATAAGGCTCCTGAAACTGGAGGACCATATGCTGCAAAAAACTCAGCAGGAAATGGTGGAAATTTTCATGCATCTCAAAGTGCAAAGCAGGAAGTTCAAACTGTTAGAATTCAGCCCATCGAAGTTCCTGCGATTCCGGTAGATGAGCTAACAGAAATTACAGAAAACTTTGGAGAAGATTCTTTGATTGGAGAGGGATCTTATGGAAGAGTATATTATGGAGTTCTTAATAGTGGGCACCATGCAGCAATCAAGAAGTTAGATGCCAGTAAACAGCCTGATGATGAGTTTTTAGCTCAGGTTTCACTGGTTTCACGGCTTAAGCATGATAATTTTGTTCAATTGCTCGGTTATTCTGTCGATGGAGACTCCCGTATTCTTGTTTACGAGTTTGCAACTAATAGATCTCTTCGTGATATCTTACACGGAAGAAAAGGTGTTCAAGGAGCACAGCCTGGTCCTGTTTTGACATGGACACAGAGAGTTAAAATTGCTGTAGGGGCTGCAAAAGGGCTTGAGTACTTACATGAGAAGGCTAATCCTCAGATTATCCACAGGGACATCAAGTCCAGCAATGTATTAATCTTTGATGATGATGTTGCTAAAATTGCAGATTTTGATTTATCAAATCAGTCTCCTGACATGGCCGCACGACTTCAATCGACTCGCGTCCTTGGAACCTTCGGTTACCATGCACCAGAATATGCAATGACTGGGCAATTGAATGCTAAGAGTGATGTATATAGCTTTGGTGTTGTCCTTCTTGAACTTTTGACTGGAAGGAAGCCCGTCGATCATACACTACCTCGTGGACAGCAAAGCCTGGTTACTTGGCTGCATCATTTTGATTTGGGGTCACATTGCAATTACAGTGTGATGCGGTTGCAGTGGTCACCACAAAATTGCAATATTGCGACTGCATCAGGTGATGTGGCTACACCAAAACTTAGTGAGGATAAAGTCAAGCAGTGTATAGATGCAAGACTTGGTGAAGACTACCCACCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCATTGTGTGTGCAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTGGTCAAAGCACTTCAACCTTTGATGAATCCAAGACCTGGAGCTGTTAATGAACCAACATACTAA 1185 0.4262 MGCFGCCEDDNGHKAPETGGPYAAKNSAGNGGNFHASQSAKQEVQTVRIQPIEVPAIPVDELTEITENFGEDSLIGEGSYGRVYYGVLNSGHHAAIKKLDASKQPDDEFLAQVSLVSRLKHDNFVQLLGYSVDGDSRILVYEFATNRSLRDILHGRKGVQGAQPGPVLTWTQRVKIAVGAAKGLEYLHEKANPQIIHRDIKSSNVLIFDDDVAKIADFDLSNQSPDMAARLQSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWLHHFDLGSHCNYSVMRLQWSPQNCNIATASGDVATPKLSEDKVKQCIDARLGEDYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLMNPRPGAVNEPTY 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1405 394 MobiDBLite consensus disorder prediction 14 37 - -
Lal3g1405 394 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 290 - -
Lal3g1405 394 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 324 389 - -
Lal3g1405 394 ProSiteProfiles Protein kinase domain profile. 69 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g1405 394 Gene3D Transferase(Phosphotransferase) domain 1 145 386 - -
Lal3g1405 394 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 290 - -
Lal3g1405 394 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 324 389 - -
Lal3g1405 394 SUPERFAMILY Protein kinase-like (PK-like) 45 378 IPR011009 -
Lal3g1405 394 SMART serkin_6 69 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g1405 394 Pfam Protein tyrosine and serine/threonine kinase 74 378 IPR001245 GO:0004672|GO:0006468
Lal3g1405 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Lal3g1405 394 PIRSF ILK 26 289 - -
Lal3g1405 394 PIRSF ILK 333 385 - -
Lal3g1405 394 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Lal3g1405 394 Gene3D Phosphorylase Kinase; domain 1 30 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1405 Lal-Chr3 19970298 19974749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1405 42 388 Receptor kinase-like Gene Family AT3G58690 43.553 7.19e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Lal3g1405 PK_Tyr_Ser-Thr 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1405 K13436 - tcc:18613791 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1405 3 19970298 19974749 Lal3g1405 3 19970298 19974749 ECH
Lal3g1405 3 19970298 19974749 Lal18g0401 18 3399421 3404048 LSH
Lal3g1405 3 19970298 19974749 Lal13g0550 13 3582575 3588379 PCT
Lal3g1405 3 19970298 19974749 Lal24g0445 24 3129428 3135716 PCT
Lal13g0550 13 3582575 3588379 Lal3g1405 3 19970298 19974749 PCT
Lal24g0445 24 3129428 3135716 Lal3g1405 3 19970298 19974749 PCT