Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1404 ATGGACGATTGTTGTGCCGTTTGCGCTGAACCCTTGGAATGGGTTGCGTATGGACCCTGTTTACACCGCGATGTGTGCTCCACTTGCGTCGCTCGCCTCCGTTTCATTTGCGATGATCGCCATTGCTGCATATGCAAGACCGATTGCAACGTCGTTTTCGTTACCAAGGCTCTAGGAGATTATACAAGGATGATTAATGACTTTTCAGCCTTGCCATCTACCGTAAGAGAGGGCAAGGCTGGATCATATTGGTACCATGAGGATACAAATGCATATTTTGATGATATGGACCATTACAAGATGATCAAGGCTATGTGCAGGCTTTCATGCAGTGTATGTGACAAGATAGAGGAGCAACCACATGATGCTTCAAGGCGACGTGAAAGGTTTAGAAATATAGGTCAGCTGAAAGGCCACTTATTCCACCGTCATAAGTTGCATATGTGCACTTTATGTTTGGAGGGAAGAAAGGTATTTATATGTGAGCAAAAACTATATTCTAGGGCACAGTTGAATCAACACATAAACACAGGTGACTCTCTGGTGGATGGAAGCGAGAGTGAGAGAGGTGGTTTTATGGGGCATCCTATGTGTGAATTCTGCAGAACACCATTTTATGGGGACAATGAACTATACACACATATGTCTACAGAACATTACACATGTCATATATGTCAAAGGCAGCACCCAGGACAGTATGAATACTATAAGAACTATGATGATCTAGAGATCCATTTCCGTCAACAGCACTTCTTATGTGAAGATGAGGCTTGCCTTGCCAAGAAATTTGTTGTCTTTCAATCTGAAGCAGAAATGAAGAGGCATAATACTACTGAACATGGAGGGCGTATGTCACGGTCAAGGCGTCATGCTGCTCTTCAGGCATGTACAGACTTTTTTTTAATCTTGAATTTCATACCGACTAGCTTTCGGTACAGACATGGTAATGAACAAAACCAACAACGTCGTGGAAGAGCTCGCACATTTAGTCGTGATATGTCTGAAAATCAACTTTCTATGGCCATCGAAGCCAGTTTGGAGACAGCTAATGCAGAGCAAATGTTCCATGATTCATCAACATCAAGTAGTGGACAAGCTGGTGTTGATGATGGGAATGCTGATGTTGATTCTATCGTTCCACCATTTGAATCATTGGCTACATCAGGTTCTGAACAATCTTCAAGATACCTTCAAGCATTGGGACACAGCTCAAGAGGTGCACCTTTGCAAGATTCTTCGTTTCCTCCGCTCGCCACACCTTCCATCAACGACCAGCAAAGTTCCAAAAATGAGTTGGAAACTTCATCCATTAACACTATGGCAGCCCGTTTGCGTCGGCATGGCAACAGAAATGTATCTGTTATTAATTCTGGTAATGCTTGGCCTGCAGCAGGTCGGGGACTGGTACAAACATCAATTATCCCTACACAATCTAAATTGTCAACAAATGTTGCTCCTGGAGTGTCGGCTAATTCTGGTCAGGTGAAGACAGAAATTAAAAGTGGGGCTTCACCCTCAACTTATGCTAGTTCTATTCAGGTTACACAGAGAACTGGACATGGACAATGGCCTGCTGGTTCATTGCAGGAAAAATGTGACAATGGTAGAACTGTTCACTCTATATCTGCTCCAAATCTCACTAAGAGCAACCCTATTGAAGGTTCGATTTCAGAGTTTCCTCCAATTTCTGCTGCACAAGTGAGCAAGTTACCTGCAAGCAGTCAATCCCAGTTGAATGTGGAGGATGTTCACTCTGCTAACAAGTCTTTAGTCGAAAGGATTCGTGGTGCTCTTGATTTTGACGAAGATAGATACACACTATTTAAAGACATATCTGCTCAATTTCGCCAAAGCACAATAGATACAGATACGTATCTGGATTATGTGCAGCAGTTTGGCTTATCTCATCTTGTACTTGAGATGGCAAGACTGTGTCCAGATCCTCAGAAGCAGAAAGAACTTATTGAATCGTACAACGCTAGTTTGCAAAGAAATGCTTTACAAGAAAATAGCAGGGTTCATGATATCACTAGCACCCATGCCAAAGACAGTAATATCTCCAAGAAAGGTAAAGGTAAGTCTGTAGATGCTAGAGGGAGTAACTCCACAGAGAGATTAGCAGATAGCTTTCTAAACACTGTACATCAACTACAATCAAGTTATAAACCTTCAGAAGAGAACTCGGAGGTACTATCAAGGGGTGATTACCGCACCAACAAAGGCAAACTAAAAATCGAGCAGCCGATCAATACAAATTCTGGTAATCAACCTATAATGAAGCTAAATGGGCAGGGTGAAACATCAAGTCGCAGTTTACCTAATCAAAATAGAGAGTATAGGGGTGGTAGGAGCAAGCAACGCAAGAAAGCATCCGAGTTCCTTAAAGTGCGCCTCGGTGATGGTTCTGTTTCAGCGCTTCTAGATCGTGAAAATTCATACACCGAATCAGATCCTGGAATAACAAATGGTCTAGATGGTGACAAGAATGGCTCTGGAGGGTTGCCTGCACGAGGTGTTTGGCAAAAAGGAGGTGCTCAGAAACTCTTTTCCTAA 2553 0.4281 MDDCCAVCAEPLEWVAYGPCLHRDVCSTCVARLRFICDDRHCCICKTDCNVVFVTKALGDYTRMINDFSALPSTVREGKAGSYWYHEDTNAYFDDMDHYKMIKAMCRLSCSVCDKIEEQPHDASRRRERFRNIGQLKGHLFHRHKLHMCTLCLEGRKVFICEQKLYSRAQLNQHINTGDSLVDGSESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQQHFLCEDEACLAKKFVVFQSEAEMKRHNTTEHGGRMSRSRRHAALQACTDFFLILNFIPTSFRYRHGNEQNQQRRGRARTFSRDMSENQLSMAIEASLETANAEQMFHDSSTSSSGQAGVDDGNADVDSIVPPFESLATSGSEQSSRYLQALGHSSRGAPLQDSSFPPLATPSINDQQSSKNELETSSINTMAARLRRHGNRNVSVINSGNAWPAAGRGLVQTSIIPTQSKLSTNVAPGVSANSGQVKTEIKSGASPSTYASSIQVTQRTGHGQWPAGSLQEKCDNGRTVHSISAPNLTKSNPIEGSISEFPPISAAQVSKLPASSQSQLNVEDVHSANKSLVERIRGALDFDEDRYTLFKDISAQFRQSTIDTDTYLDYVQQFGLSHLVLEMARLCPDPQKQKELIESYNASLQRNALQENSRVHDITSTHAKDSNISKKGKGKSVDARGSNSTERLADSFLNTVHQLQSSYKPSEENSEVLSRGDYRTNKGKLKIEQPINTNSGNQPIMKLNGQGETSSRSLPNQNREYRGGRSKQRKKASEFLKVRLGDGSVSALLDRENSYTESDPGITNGLDGDKNGSGGLPARGVWQKGGAQKLFS 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1404 850 MobiDBLite consensus disorder prediction 728 742 - -
Lal3g1404 850 MobiDBLite consensus disorder prediction 669 701 - -
Lal3g1404 850 CDD RING-HC_ZNF598 5 46 IPR041888 -
Lal3g1404 850 PANTHER EBR1 1 849 - -
Lal3g1404 850 MobiDBLite consensus disorder prediction 675 695 - -
Lal3g1404 850 MobiDBLite consensus disorder prediction 807 850 - -
Lal3g1404 850 MobiDBLite consensus disorder prediction 402 434 - -
Lal3g1404 850 MobiDBLite consensus disorder prediction 717 792 - -
Lal3g1404 850 PANTHER ZINC FINGER PROTEIN 598 1 849 IPR044288 GO:0061630|GO:0072344
Lal3g1404 850 SMART c2h2final6 220 250 IPR013087 -
Lal3g1404 850 SMART c2h2final6 251 280 IPR013087 -
Lal3g1404 850 SMART c2h2final6 108 144 IPR013087 -
Lal3g1404 850 SMART c2h2final6 196 219 IPR013087 -
Lal3g1404 850 MobiDBLite consensus disorder prediction 353 390 - -
Lal3g1404 850 MobiDBLite consensus disorder prediction 353 368 - -
Lal3g1404 850 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Lal3g1404 850 MobiDBLite consensus disorder prediction 744 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1404 Lal-Chr3 19962715 19967768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1404 1 850 C2H2 Transcription Factor Family AT3G62240 50.857 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1404 K22381 - gmx:100799878 1323.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1404 3 19962715 19967768 Lal3g1404 3 19962715 19967768 ECH
Lal3g1404 3 19962715 19967768 Lal5g0214 5 1842893 1848708 LSH
Lal3g1404 3 19962715 19967768 Lal18g0404 18 3426077 3431250 LSH