Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1397 ATGAATAATAATAATAATAATTCTCACCACCACCTCCATCACCACCCTTCTCCTTTCAACCATGGAAGTGGTTGTAATAATAATAATAATAATAACGTATTTCCAATCCCAAACCCATACTATGATCAACAACATCAACATCAACATGTTAACCATTTCAACAACCATTCGATGCCACCACGTCCTTTCCGCAAACGAGGTTGGCATCAAGGAGATCAAGTGGATGGTTGCAGTCATGTAAAAGTTTATGTTGCACCAGTTCCAAGAACATCAACAGAGGCTGATGTTCGCCTTGTGTTTGAAGTACATGGAACTATTATTGAGGTTGTTCTTTTAAAGGATAAGTTGACTGGTGCACGACAAGGAAGTTGTTTAGTGAAATATGCAACACTAGATGAAGCTGACAGGGCAATTAAGGCTTTAAATAATCAGTATACTTTTCCTGGGGAAGCCTCTGCCGTTGTTGTCAGATATGCTGATCGAGAACGTGAACGTCTTGGAGTTCAAAGAAACTTAGAAATGAAAGGCCGTTCAAAAGAGGTGGTGGTGCATAAAGTGTTTGTTGGTCATATCAACAAAGAAGCTTCAAAAAAGGATTTTGAAGATATATTTTCCCCCTACGGACATGTAGAAGATGTCTTCATTGCGCACCTTCGTGGATATGCGTTTGTCAAATATTCTAATAGAGAAATGGCATCAGCTGCAATCGAAGGGTTGAATGGAAAATTCACGATGAGAGGCTGTGATAATCCATTAATTGTTCGTTTTGCTGATCCTATGAAACCTAAGACTGGCGAATCAAGGGTCAAATATTCATCTGGGAATACAAATTTCGGTCCCGGTTCTCAAGAACCAGCAGCTTGGCCACAACCAAATTTCGGCAATTCCAATATTGGAAGGAGTATTCTGCCTACTGGCCCACATCATCCTACAATTCCACACCCAAAAGTTACTTCTCAAATGCAAAACTGGGAACGTGGCGCTGCTGTGGTACAACAGCCATTTCCTTTCCAGCAAGTACATTCACAAATGGTCTCAATGCCCTTGCAGCCAATACAAGCTCCTAATGTGTCATCTCAACCATTTAGTACAGAGGTGCAGAGACAGTCGCATCCAGCAGATTCATCAGCTCAAAATATGGAGCAGAAACTAAATTCACAGTTACCTACTCAAACTGGAAGCAATCCTGATAAAGTTGTGGACAGCATCCCACCCATTGTGCCTATAAATTTCCCAGATGAAGTTTTTCCAGACTGTGACTGGAGTGAACACTACTGTCCTGATGGTCATAAGTACTACTATAACTGTGTCACCTGCGAAAGCCGATGGGAGAAGCCCGAGGAGTATGTGCTTTATGAGACAGAAATCACAGAAGCAGCAAGGGTAGGAGGACCATAG 1398 0.417 MNNNNNNSHHHLHHHPSPFNHGSGCNNNNNNNVFPIPNPYYDQQHQHQHVNHFNNHSMPPRPFRKRGWHQGDQVDGCSHVKVYVAPVPRTSTEADVRLVFEVHGTIIEVVLLKDKLTGARQGSCLVKYATLDEADRAIKALNNQYTFPGEASAVVVRYADRERERLGVQRNLEMKGRSKEVVVHKVFVGHINKEASKKDFEDIFSPYGHVEDVFIAHLRGYAFVKYSNREMASAAIEGLNGKFTMRGCDNPLIVRFADPMKPKTGESRVKYSSGNTNFGPGSQEPAAWPQPNFGNSNIGRSILPTGPHHPTIPHPKVTSQMQNWERGAAVVQQPFPFQQVHSQMVSMPLQPIQAPNVSSQPFSTEVQRQSHPADSSAQNMEQKLNSQLPTQTGSNPDKVVDSIPPIVPINFPDEVFPDCDWSEHYCPDGHKYYYNCVTCESRWEKPEEYVLYETEITEAARVGGP 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1397 465 Gene3D - 73 167 IPR012677 -
Lal3g1397 465 PANTHER TRANSFORMER-2-RELATED 323 453 - -
Lal3g1397 465 PANTHER TRANSFORMER-2-RELATED 59 268 - -
Lal3g1397 465 MobiDBLite consensus disorder prediction 20 36 - -
Lal3g1397 465 Gene3D - 173 266 IPR012677 -
Lal3g1397 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 259 IPR000504 GO:0003723
Lal3g1397 465 ProSiteProfiles WW/rsp5/WWP domain profile. 421 448 IPR001202 GO:0005515
Lal3g1397 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 244 IPR000504 GO:0003723
Lal3g1397 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 149 IPR000504 GO:0003723
Lal3g1397 465 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 323 453 - -
Lal3g1397 465 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 59 268 - -
Lal3g1397 465 ProSitePatterns WW/rsp5/WWP domain signature. 421 446 IPR001202 GO:0005515
Lal3g1397 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 161 IPR000504 GO:0003723
Lal3g1397 465 MobiDBLite consensus disorder prediction 353 397 - -
Lal3g1397 465 SUPERFAMILY RNA-binding domain, RBD 51 169 IPR035979 GO:0003676
Lal3g1397 465 SMART ww_5 416 448 IPR001202 GO:0005515
Lal3g1397 465 MobiDBLite consensus disorder prediction 1 36 - -
Lal3g1397 465 SUPERFAMILY WW domain 420 452 IPR036020 GO:0005515
Lal3g1397 465 Pfam WW domain 420 446 IPR001202 GO:0005515
Lal3g1397 465 SMART rrm1_1 185 255 IPR000504 GO:0003723
Lal3g1397 465 SMART rrm1_1 81 157 IPR000504 GO:0003723
Lal3g1397 465 SUPERFAMILY RNA-binding domain, RBD 184 282 IPR035979 GO:0003676
Lal3g1397 465 Gene3D - 418 460 - -
Lal3g1397 465 CDD WW 419 448 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1397 Lal-Chr3 19895857 19904848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1397 78 312 Eukaryotic Initiation Factors Gene Family AT1G71770 25.306 5.41e-12 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1397 3 19895857 19904848 Lal3g1397 3 19895857 19904848 ECH