Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1365 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAAGGAAGGTGGACAACAGAAGAAGATGAAATCTTGACAAAGTATATTCAGGCCAATGGTGAAGGCTCTTGGAGGTCATTGCCCAAAAATGCAGGTTTACTGAGATGTGGTAAGAGTTGCAGATTAAGATGGATCAATTATTTAAGAACTGATTTAAAAAGAGGCAACATTTCTATTGAAGAGGAAAATCTCATTACTAAGTTGCATGCTTCTTTTGGTAACAGGTGGTCATTGATAGCTAGTCACTTGTCCGGAAGAACCGACAATGAAATCAAAAACTATTGGAACTCTCACTTGAGCAGAAAGATTTTCAGTTATGATGATACTACAAGTAATAAACACGAAGGCACCACCAGAGGCGGTATAACTAGCCGATGGGCTATGAAGAAGAACAAAACCTATGCCCTAAAAACAAAGCTTAATATTAATCATCAACAAAGTGTAAAACAAATTCATCAGAATAATGAAGCAGTTCCTCTACCACCTACACCATCACTAGAAACTGAGAACTTGAAAATGATAATGGATTTCATGGCTTTGGACCCAGAGAGAGAAGAGGAAGAAGAAGAAGAAGTAGGTGATGGGTTAGGTAAAAGTTCCTCTCAGCAAGAAGAAGAAAGAAGAGGAAGTAGATTGGTCCAAGAGGAACAGTACTTTGCAGTGGAGGAAGGTGAAAGAATAAATGAGATGTTATGCATTGATCATGAGATTTTGGGACTGGCCCAAGAAGTAATTAATGGTTGTGGGGATTTGAGTTTTAATGAGTTCATGGACACTTGCTTTGGGGAACAAGAAAGTGGGGTTTTGTCGTTGAAATTTGGTGAAGAAATACTAGAAAGTAATAATAATAGTAATAGTAATAATAATGAAGAAGAAGAAGTAGTGGGAATTGATGCAGCAAGTAATGAACCAACACGTACAACTAAGCTAGATAATAGTTTAATCCAAAGCTCAAATGGGGAGTGTAGAGATTTATGTTCTTCCATGGCTTTGGGTTTAGATCATAATAATAATAATAGTAGAAGTAGTAGTAGTAACTTGGATTTGGAGAGTGTGATAGAATTGAATGGTAATATAGTGTCAGAGTCATTGGAGGATAAAGAAAACTTGTTGGCATGGCTATGGGAAGATGATGATGGTTGGGGAAAGGATTGTGATCAATTTGGAGATATTGATTCTGAATTGGATGTAATGGTTGCTTGGTTTAGTTGA 1251 0.3733 MGRAPCCEKVGLKKGRWTTEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRTDLKRGNISIEEENLITKLHASFGNRWSLIASHLSGRTDNEIKNYWNSHLSRKIFSYDDTTSNKHEGTTRGGITSRWAMKKNKTYALKTKLNINHQQSVKQIHQNNEAVPLPPTPSLETENLKMIMDFMALDPEREEEEEEEVGDGLGKSSSQQEEERRGSRLVQEEQYFAVEEGERINEMLCIDHEILGLAQEVINGCGDLSFNEFMDTCFGEQESGVLSLKFGEEILESNNNSNSNNNEEEEVVGIDAASNEPTRTTKLDNSLIQSSNGECRDLCSSMALGLDHNNNNSRSSSSNLDLESVIELNGNIVSESLEDKENLLAWLWEDDDGWGKDCDQFGDIDSELDVMVAWFS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1365 416 SMART sant 66 114 IPR001005 -
Lal3g1365 416 SMART sant 13 63 IPR001005 -
Lal3g1365 416 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal3g1365 416 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lal3g1365 416 CDD SANT 16 61 IPR001005 -
Lal3g1365 416 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal3g1365 416 CDD SANT 73 112 IPR001005 -
Lal3g1365 416 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal3g1365 416 PANTHER MYB TRANSCRIPTION FACTOR 2 394 - -
Lal3g1365 416 Gene3D - 71 116 - -
Lal3g1365 416 Gene3D - 11 67 - -
Lal3g1365 416 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 394 - -
Lal3g1365 416 MobiDBLite consensus disorder prediction 196 224 - -
Lal3g1365 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal3g1365 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal3g1365 416 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1365 Lal-Chr3 19424510 19428701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1365 1 127 MYB Transcription Factor Family AT5G49330 78.740 1.16e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal3g1365 Myb_DNA-binding 2.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1365 K09422 - gmx:100814275 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1365 3 19424510 19428701 Lal3g1365 3 19424510 19428701 ECH
Lal3g1365 3 19424510 19428701 Lal5g0241 5 2123963 2130500 LSH
Lal3g1365 3 19424510 19428701 Lal12g0520 12 3685842 3687842 PCT
Lal3g1365 3 19424510 19428701 Lal13g0518 13 3341923 3344824 PCT
Lal12g0520 12 3685842 3687842 Lal3g1365 3 19424510 19428701 PCT
Lal13g0518 13 3341923 3344824 Lal3g1365 3 19424510 19428701 PCT