Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1354 ATGGGTTTCAAGAACTTAACCATACTTGCTTTCCAAGTTTCACTTCTACTTTCTTTCTTATCATCCTTATCCATAGCAAATAACTATGCTGAATCAATTGTTCCAATAGAAACTATTTGCAACTACACTTTATACCCTTCTTACTGCCAAACTATCCTTGCTAATCAAAATGGCACCACATTCGAGTATTGCAACATTTCCATCAGAAAATCTTTGTCACGGTCACGTATGTTCTTGAACTTAGTTTATTCATATTTTCAAGGTCTCTCATCTTTCTCTCAAATCACAATTCGTGCTCTTGAAGATTGTCAATTTCTATCTGAACTTAATTATGAATACTTATCAAACACTTATAATGTTATTGAAAAATCTGGCAATGTTCTTACGACTTCTCAAATTGAAGATTTTCACACATTTCTTAGTGCTATTTTGACAAATCAACAAACTTGTTTAGATAGCCTACAGACCTCAACTTCAGATTCAAGAGTGAAAAATGATCTTTATTCCTCTCTCTATAATGATATGAAGCTTAATAGTGTATCCCTTGCATTATTCAAAGAAGCTTGGGTTCTTGAGAATAAAAACTCAACATCATCATGGGAAAACCATACAAGTCAATCCAATTTCCAAAACCAAGTACGTGGCATCTATGATTCTTCAAAAGGCAATGGAAGAAAACTACTCCAAACAATGGATGATAGTGAAAGTATAGTGGTAAAGGATACTGTGGTTGTTAGTAAAGATGGAAGTGGAAACTTCACAACTATCAATGATGCCATAGATGCTGCACCAAATAACACAGTTGCTAGTGATGGCTACTTCATCATTTTTATCACCCAAGGTATATATCAAGAGTATGTATCTATAGCCAAAAACAAAAAGTTCTTGATGTTGATTGGAGATGGAATCAATAAGACTATTATTACTGGTGATCACAATGTCGTGGATGGTTTTACAACATTCAATTCAGCAACATTTGCAGTGGTAGCACAAGGGTTTGTAGCAGTTAACATAACATTTGAAAACAGTGCTGGAGCAAGTAAACATCAAGCAGTAGCAGTAAGAAATGGAGCAGATATGTCAACATTCTATAGTTGCAGTTTTGAAGGGTACCAAGACACCTTATACACACATTCATTGAGACAATTCTATCGTGAATGCAACATATATGGAACAGTTGATTTCATATTTGGAAATGCAGCAGTTGTTTTACAAAGTTGTAACTTGTATCCTCGTCTTCCAATGACTCAACAATTCAATGCTATAACTGCTCAAGGTCGTAGTGATCCAAATCAAAACACTGGTATTTCAATACAAAATGCAACAATAAAACCTTCTAATGATTTGGCTCCAATGGTTAGTACTGTGAAAACATACCTTGGAAGGCCATGGAAGGAGTACTCAAGAACAGTGTATATGGAATGTTTTATGGATAATTTCATAGCTCCAGAAGGTTGGCATGAATGGAATGCTGATTTTGCATTAAACACTTCATACTATGGAGAGTATAATAACATTGGACCTGGTTCAAACATTGCAAATAGGGTAACATGGTTGGGATATCATGTTATCAATGCTAATGATGCACTTAATTTTACTGTCCTAACCTTCTTGGATGGACATTTTTGGTTGCCTCAAACTAGTGTTCCTTTTCAGCTCTCTCTATAA 1668 0.3489 MGFKNLTILAFQVSLLLSFLSSLSIANNYAESIVPIETICNYTLYPSYCQTILANQNGTTFEYCNISIRKSLSRSRMFLNLVYSYFQGLSSFSQITIRALEDCQFLSELNYEYLSNTYNVIEKSGNVLTTSQIEDFHTFLSAILTNQQTCLDSLQTSTSDSRVKNDLYSSLYNDMKLNSVSLALFKEAWVLENKNSTSSWENHTSQSNFQNQVRGIYDSSKGNGRKLLQTMDDSESIVVKDTVVVSKDGSGNFTTINDAIDAAPNNTVASDGYFIIFITQGIYQEYVSIAKNKKFLMLIGDGINKTIITGDHNVVDGFTTFNSATFAVVAQGFVAVNITFENSAGASKHQAVAVRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECNIYGTVDFIFGNAAVVLQSCNLYPRLPMTQQFNAITAQGRSDPNQNTGISIQNATIKPSNDLAPMVSTVKTYLGRPWKEYSRTVYMECFMDNFIAPEGWHEWNADFALNTSYYGEYNNIGPGSNIANRVTWLGYHVINANDALNFTVLTFLDGHFWLPQTSVPFQLSL 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1354 555 SMART PMEI_2 31 184 IPR006501 GO:0004857
Lal3g1354 555 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17 552 - -
Lal3g1354 555 Gene3D - 236 555 IPR012334 -
Lal3g1354 555 SUPERFAMILY Pectin lyase-like 237 552 IPR011050 -
Lal3g1354 555 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Lal3g1354 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 186 IPR035513 -
Lal3g1354 555 PANTHER PECTINESTERASE 17 552 - -
Lal3g1354 555 Pfam Pectinesterase 243 540 IPR000070 GO:0030599|GO:0042545
Lal3g1354 555 Pfam Plant invertase/pectin methylesterase inhibitor 36 184 IPR006501 GO:0004857
Lal3g1354 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 188 IPR035513 -
Lal3g1354 555 CDD PMEI-like_3 38 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1354 Lal-Chr3 19329881 19331826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1354 38 555 Carbohydrate Esterase AT1G02810 54.182 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1354 K01051 - gmx:100792847 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1354 3 19329881 19331826 Lal3g1354 3 19329881 19331826 ECH