Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1328 ATGAGTGCTTATTTTAATAATAGAGCATGTGATTATTGTGCTGAAACAAAAGCACTTGTATACTGCAGAGCAGATTCTGCTAAACTATGTTTCTCTTGTGACCGTGAAGTTCATTCAACAAATCAGCTTTTCTCAAAGCACACTCGTTTTCTTCTTTGTGATACATGTGATGATTCCCCTGCTACTATACTCTGTTCAACAGAGTCCTCTGTTTTGTGTCAGAACTGTGACTGGGAAAAACACAACAACAACAACAACAACAACAACAACATCAACAATAGTTCTATGTCTTCTTGTTCTTCTGTGCATGAAAGAAGGCCTCTTGAAGGTTTCACCGGATGCCCTTGTGTCAATGAATTGTTATCAATTGTTGGGTTTGAAGATGTTGGAAAAAAATCTATACTTTCTTCAGATTTGGAAAGTGGTGATGGGTTTTTTGGGTCTGATACTGAAGGAATTTCAGATTTGTTTGTATGGGATGCTCCTTCTGTTGTTAGTATGGATGATTTGATCTCTACTTCTGGTTCTTCTCATAATTTCCAAGCTATGGAGGTTCCTCCTCTACCCAAGAATCGTAAGGTTGCTTGTGGGAAGCACAAAGAAGAGGTTCTGAATCAGCTTTGTAAGCTAGCAAAGTCTGAACCCTTAGAGTTATATACTGAACAATATGTGCCACCAGGGAATTTGTTCACTGGTTTTGAAGGTGACTTTGAAGCTGATTTGTTTCCTTCCTTTGAGTGGCATGGAGAAAGCAGTGAGCATGTAAATCAAGTAGTTCCACTCCCACCTGATACATCAGTAAGAGCTTATACAGAAGAAGTTAGAGTTAAACATTCAACTTCTCTTTGGGACACTCATGCTTTTGATGAAAATGGGGGTTCACAATCACATTCTCTTATGACTGAAACATTACCAACTACTCCTAAAGCTGTACCTTGTGAGTTAACAAGTCAAGAAAGAGATTCTGCATTACTAAGGTACAAGCAGAAGAAGAAAACAAGAAGATATGAGAAGCACATAAGATATGAATCACGAAAAGTTCGTGCAGAAAGCAGGATAAGAGTTAATGGTCGATTTGCCAAGATGAAAGACTAA 1095 0.3826 MSAYFNNRACDYCAETKALVYCRADSAKLCFSCDREVHSTNQLFSKHTRFLLCDTCDDSPATILCSTESSVLCQNCDWEKHNNNNNNNNNINNSSMSSCSSVHERRPLEGFTGCPCVNELLSIVGFEDVGKKSILSSDLESGDGFFGSDTEGISDLFVWDAPSVVSMDDLISTSGSSHNFQAMEVPPLPKNRKVACGKHKEEVLNQLCKLAKSEPLELYTEQYVPPGNLFTGFEGDFEADLFPSFEWHGESSEHVNQVVPLPPDTSVRAYTEEVRVKHSTSLWDTHAFDENGGSQSHSLMTETLPTTPKAVPCELTSQERDSALLRYKQKKKTRRYEKHIRYESRKVRAESRIRVNGRFAKMKD 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1328 364 ProSiteProfiles CCT domain profile. 320 362 IPR010402 GO:0005515
Lal3g1328 364 CDD Bbox1_BBX-like 9 52 - -
Lal3g1328 364 ProSiteProfiles Zinc finger B-box type profile. 48 82 IPR000315 GO:0008270
Lal3g1328 364 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 6 363 - -
Lal3g1328 364 Pfam CCT motif 320 362 IPR010402 GO:0005515
Lal3g1328 364 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 6 363 - -
Lal3g1328 364 ProSiteProfiles Zinc finger B-box type profile. 5 52 IPR000315 GO:0008270
Lal3g1328 364 SMART bboxneu5 5 52 IPR000315 GO:0008270
Lal3g1328 364 SMART bboxneu5 53 108 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1328 Lal-Chr3 19066200 19070170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1328 7 335 C2C2-CO-like Transcription Factor Family AT2G47890 40.719 1.41e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lal3g1328 CCT 1.3e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1328 - - gmx:100817838 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1328 3 19066200 19070170 Lal3g1328 3 19066200 19070170 ECH
Lal3g1328 3 19066200 19070170 Lal5g0299 5 2644570 2648669 LSH