Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1325 ATGAGGAAGGTGAAGGAGAAGATGGATTGTGTAATCAGCGAAGGGAATGGAGCCTCTAACAATGGTGGTGCTTCCGGTGGCTCTTCCTCCTCTAATCACCATAACCAAGGTGTTAAAAATGAGTTGAAATCTGAATTGTGGCGTTTATGTGCTGGGCCATCTGTTTATGTTCCTGGCGTTGGAGAGAAGGTTTTCTACTTCCCTCAAGGTCACTTGGAGCAGGTTGCTGCATTTACTCAACATCAGGAAGATGGTCACATGGATATTCCTGCATATGATTTACCTTCTAACATCCTCTGCAGGGTTATGTCTGTCCAGTTAAAGGCTGAAGCTAACTCAGATGAGGTTTTTGCTCAAATTACTTTAGTTCCAGAACTCAAGCAAAATGGAATTATCTCAGAAGATGAAGACACTTATCATATTCCTGAAAGAACTACTACTTTCTGCTCCTTTATTAAGATACTAACTGCATCAGACACAAGTCCACATGGTGGATTCTCTATTCCCAAACTGCATGCTAATGAATGTCTCCCTCCACTGGACATGACTCTCCAAACACCAACACAAGAACTGGTTGCAAAGGACTTGCATGGATTTGAGTGGCATTTTACGCATAAATATCGTGGTGAGCCAAAACGTCACTTGCTTACTAGCGGTTGGAGCACATTTGTCAATTCAAAAAAGCTTGTTGCTGGAGATGCATGCATTTTTCTTAGTGGGGAAAATGGAGAACTTTGTATTGGGATTCGTCGAGCAAAGAGACAGCATAATAAAGAATCTGCATCTACTTCTCTGATATCGAGTCATAGCATGCAACTAGGAATATTGACTACTGCTTCCCATGCTGTTGCCACAGGATCCATGTTTACTGTCTACTACCACCCTTGGATGAATCCCTTTGAATTTATTGTTCCTGTGCAACACTACATGAAGTCAACTGTAGTGGACTATTCAATTGGAATGAGAGTACACATGCAAATTGAAGTTGAAGATTCCACAAGAAGATATGCAGGTTCGATAATAAGTATTGGAGATATCGATAGCATCAGATGGCTTGGTTCAACATGGAGATGTCTTGAGGTGCAATGGGATGCTATACAAAATAAGTATATGATCCCCGAAAGGGTTTGTCCATGGTGGATTGAGCCCTTAAAATCTGCCATGAAGAAACCAATTCCTATTCTCCCCCTACCAAAGAAGGCACGTGTACCGAATCTGCTATGTCCTGGATTAAGTCGCTTTTCCAAGGATGACATACTTCGGAATCCTGCCGAGCCTGCATCTCAGAGAGGGGGAAGGGTCTTACAAGGTAAAGATTACATTAACATAGGTTCTTCGCAGCCTGCACAAAAACCACCACCATCGAAAGATGCGTGGTTAGGATTGGAGAGGAAGTTTCCCTTTGTCATGCAAGACCCTCCGCACCAATCTCGAGGTAGATCAGTGTCATTTCCACATGAAGACATCTCAACTTCAAGTTCAAATATGAACTCAATTGGTTCTGTATCCCAAGGATGGCCTTCTGAATCTAAAGAAGAAAATCATGTTTCGTTTGGCCAACCTGGCCTTCTTAAGCTTTTCGGGGTTAACTTAACCGATACCCAAATGGAGCTCCCTTCACCACAATTTGCTGTTTTCAGCCAGATTTCTAGTCTCATTTCTATTCCTCCATTGTCTCAGACAAGCATTTATGCAACTATCCCAGCTACAAAACCATATGATAGTATTGCAGTTGTTAACTCGGAGAAAAAATGCAAGAATTGTCACTCAGTTGATAGGAGGAGTTGCACAAAGGTGCTTAAGCAGGGAACTGCGCTTGGAAGAGCAATTGACCTCAAACGTTTTTCGGGCTATGACGAACTTATCTCCGAACTCGACTCGATGTTTGATTTCGGAGGAAGCTTAGTTAATGGATGCAGTGGATGGCATTTGACCAGCATAGATGATGATGGTTTTATGACCCTGTTAGGAGATTACCCATGGCAGGATTTTCAGTCATCCATGGTGCAAAAGATAATCATATGTCCCAAGGATGGTATTAACAATCTCAGTTGGAGCAAATCAGTTGATCCTACAAGCCTTTAG 2085 0.4235 MRKVKEKMDCVISEGNGASNNGGASGGSSSSNHHNQGVKNELKSELWRLCAGPSVYVPGVGEKVFYFPQGHLEQVAAFTQHQEDGHMDIPAYDLPSNILCRVMSVQLKAEANSDEVFAQITLVPELKQNGIISEDEDTYHIPERTTTFCSFIKILTASDTSPHGGFSIPKLHANECLPPLDMTLQTPTQELVAKDLHGFEWHFTHKYRGEPKRHLLTSGWSTFVNSKKLVAGDACIFLSGENGELCIGIRRAKRQHNKESASTSLISSHSMQLGILTTASHAVATGSMFTVYYHPWMNPFEFIVPVQHYMKSTVVDYSIGMRVHMQIEVEDSTRRYAGSIISIGDIDSIRWLGSTWRCLEVQWDAIQNKYMIPERVCPWWIEPLKSAMKKPIPILPLPKKARVPNLLCPGLSRFSKDDILRNPAEPASQRGGRVLQGKDYINIGSSQPAQKPPPSKDAWLGLERKFPFVMQDPPHQSRGRSVSFPHEDISTSSSNMNSIGSVSQGWPSESKEENHVSFGQPGLLKLFGVNLTDTQMELPSPQFAVFSQISSLISIPPLSQTSIYATIPATKPYDSIAVVNSEKKCKNCHSVDRRSCTKVLKQGTALGRAIDLKRFSGYDELISELDSMFDFGGSLVNGCSGWHLTSIDDDGFMTLLGDYPWQDFQSSMVQKIIICPKDGINNLSWSKSVDPTSL 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1325 694 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Lal3g1325 694 ProSiteProfiles PB1 domain profile. 594 677 IPR000270 GO:0005515
Lal3g1325 694 SMART B3_2 151 253 IPR003340 GO:0003677
Lal3g1325 694 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 685 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal3g1325 694 MobiDBLite consensus disorder prediction 14 37 - -
Lal3g1325 694 Gene3D - 590 684 - -
Lal3g1325 694 Gene3D - 149 253 IPR015300 -
Lal3g1325 694 Pfam Auxin response factor 279 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal3g1325 694 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
Lal3g1325 694 SUPERFAMILY DNA-binding pseudobarrel domain 146 282 IPR015300 -
Lal3g1325 694 MobiDBLite consensus disorder prediction 471 514 - -
Lal3g1325 694 CDD B3_DNA 150 251 IPR003340 GO:0003677
Lal3g1325 694 MobiDBLite consensus disorder prediction 14 38 - -
Lal3g1325 694 Gene3D - 316 390 - -
Lal3g1325 694 PANTHER AUXIN RESPONSE FACTOR 30 685 - -
Lal3g1325 694 MobiDBLite consensus disorder prediction 483 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1325 Lal-Chr3 19011729 19021344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1325 42 684 B3 DNA Binding Superfamily AT4G23980 38.973 2.67e-133 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal3g1325 B3 4.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1325 - - lja:Lj1g3v4764520.2 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1325 3 19011729 19021344 Lal3g1325 3 19011729 19021344 ECH