Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1323 ATGTCTGAAATGAAGGAAGAGAATAAATCTAAGGAGGAAAGTGTGAAACTATTCGTGGGTCAAGTACCAAAACACATGACTGAAGATGAATTAGTTATAATGTTCAAAGAATTCGTGTTAGTTGAACAAGTCAACATTATCAAGGACAAAGCCACACGCGCCTCCAGAGGTTGTTGTTTCTTGATTTGTCCGTCGAGGGAAGAAGCGGATAAGGCAGTTAATGCATTTCATAATAAGAAAACGCTACCAGGGGCCTCTAGTCCATTGCAAGTGAAATATGCAGATGGCGAGTTGGAAAGACTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGATGAAGTCACTGCACTTTTCTCCAATTATGGAACTATAAAGGATTTACAGATTTTACGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCACTTGCTGCTTTGGAGGCAATTAATGGAAAACATAAAATGGAGGGTTCAAGTGTTCCATTGGTTGTCAAATGGGCTGATACGGAAAAGGAAAGACAAGCTCGGAGAGCTCAGAAAGCACAATCCGAAGCTTCTAATTTGCCACATGCTGATTCTCAGCATCCTTCATTATTTGGGGCCATGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTACCAGACTCCCGGGGGTTATGGGATCATGCCATACCGCTTGCCACCAATGCAGAATCGACCTGGTTTTCATAACATGATGCCTCACATGAATCAAGGAAATGCATTACGGCCTGATCTCGGCACCAACATGAACCCTAGAAACTATCCTTTGCGTCCTGCAAGTTATGTCGGCTCTTACCCTGCTGTGCCAGGTGTACAACATCCAATGGCGTATTCTAGAGGAATGAGTAATCCAAGACCTGTGAATAGCTCTCCAGGTTCGGTTTCACCCGCAGGTGGAAATAGCAACTCTTTTACATCTTCGGGCAAACATTCCGGTGGTGGTCAGGTTGAAGGACCACCTGGTGCCAATTTATTTATTTATCACATACCTCAAGAATTCGGAGACGAAGAACTTGCAACAGCTTTTCAACCATTTGGTAGAGTTGTGAGTGCTAAAGTTTTTGTCGATAAAGCGACCGGAGTTAGCAAATGTTTCGGGTTTGTTAGTTATGATTCTCCAGAAGCTGCTGAGTCTGCCATTAGTGTGATGAATGGATCCCAATTAGGAGGTAAGAAATTAAAGGTTCAGCTTAAGAGAAACAACAATCAGAGTAAGACATACTGA 1293 0.423 MSEMKEENKSKEESVKLFVGQVPKHMTEDELVIMFKEFVLVEQVNIIKDKATRASRGCCFLICPSREEADKAVNAFHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVTALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSEASNLPHADSQHPSLFGAMPMGYVPPYNGYGYQTPGGYGIMPYRLPPMQNRPGFHNMMPHMNQGNALRPDLGTNMNPRNYPLRPASYVGSYPAVPGVQHPMAYSRGMSNPRPVNSSPGSVSPAGGNSNSFTSSGKHSGGGQVEGPPGANLFIYHIPQEFGDEELATAFQPFGRVVSAKVFVDKATGVSKCFGFVSYDSPEAAESAISVMNGSQLGGKKLKVQLKRNNNQSKTY 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1323 430 CDD RRM3_CELF1-6 347 419 - -
Lal3g1323 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 345 423 IPR000504 GO:0003723
Lal3g1323 430 MobiDBLite consensus disorder prediction 185 208 - -
Lal3g1323 430 MobiDBLite consensus disorder prediction 305 335 - -
Lal3g1323 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Lal3g1323 430 SUPERFAMILY RNA-binding domain, RBD 103 426 IPR035979 GO:0003676
Lal3g1323 430 SUPERFAMILY RNA-binding domain, RBD 7 98 IPR035979 GO:0003676
Lal3g1323 430 CDD RRM1_2_CELF1-6_like 16 92 - -
Lal3g1323 430 PANTHER RNA BINDING PROTEIN 9 417 - -
Lal3g1323 430 SMART rrm1_1 104 179 IPR000504 GO:0003723
Lal3g1323 430 SMART rrm1_1 346 419 IPR000504 GO:0003723
Lal3g1323 430 SMART rrm1_1 16 92 IPR000504 GO:0003723
Lal3g1323 430 MobiDBLite consensus disorder prediction 299 342 - -
Lal3g1323 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Lal3g1323 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Lal3g1323 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Lal3g1323 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Lal3g1323 430 Gene3D - 2 98 IPR012677 -
Lal3g1323 430 Gene3D - 322 429 IPR012677 -
Lal3g1323 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Lal3g1323 430 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 9 417 - -
Lal3g1323 430 CDD RRM1_2_CELF1-6_like 104 179 - -
Lal3g1323 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Lal3g1323 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Lal3g1323 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 347 417 IPR000504 GO:0003723
Lal3g1323 430 Gene3D - 99 192 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1323 Lal-Chr3 18997802 19002880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1323 346 429 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 2.75e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1323 3 18997802 19002880 Lal3g1323 3 18997802 19002880 ECH