Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1311 ATGGAGGATTTGAAGAAGAGAAAGCTAGAGGAGCATGACAATGGTGATTTTACTTCCAAGGAAGACCTTCGTTTTCTTCTCGAACCTCTTTCTAAACCTCAACTCGTTGATCTTCTCTCTAAACTAGGGTCCCAATATCCTTCAATTGAAGAAGAAATAAAAATTATTGCAAGTGCTGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCATGGAATACAACTTCAGAAACCTTGCGTGCTGCATTTCAAGAGCATGGAGAAATTGAGGAAGGGGCTGTGATCTATGATAAAACGACATCGAAATCCCGTGGTTATGGTTTTATCACTTACAGAAATATGGAATCAACACAGCTAGCATTGAGAGCACCTAACAAGTTAATTGATGGAAGATTAGCGGTCTGTAATCTAGCTTGTGAGGGCTTAAACGGAGCAAGTAGTGCTTCCGATCTTGCTCTAAGAAAGCTTTATATTGGAAGCTTATCACCAGAAGTCACAAGTGAGATGCTGCTTAGCTATTTTGCGAGACATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAAGGATACAAATGAATCACGTGGTTTTGGTTTTGTTACATACAAGACACCGGAGTCTGCAAAGAAAGCCATTGACGACCCAGAAAAGACTCTTGGGGGGAGGAATATAATTGTAAAATATGCTGATTCTAACAAAGGTAAAACTGGGCAGCAACCATTTCCTGCAGGAGTGGTTCCAATGGCACCCTTACCTATGGTCCCAGGATATGTTCAGCCTGGAAAAGCTCACGTCGGTGATACCACCCCAGTCGGGTACGCTTACCCCCAAGCTGTAGCTCCATATCCCGCATCTTCTTATCCCGGCCCTCCCATCGCACCCTCTCCATATCCAACACAAGGGCATGTTCTGTATCGTCCAGTTACTTCCCAGAAAGACCGACTAGGGTTCCCGGCAGCTCAACCGATCGGAATGAACAACTACCCTTATTACTATCACAAGCAATGA 1011 0.4402 MEDLKKRKLEEHDNGDFTSKEDLRFLLEPLSKPQLVDLLSKLGSQYPSIEEEIKIIASADPVHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKTTSKSRGYGFITYRNMESTQLALRAPNKLIDGRLAVCNLACEGLNGASSASDLALRKLYIGSLSPEVTSEMLLSYFARHGEIEEGSVAYDKDTNESRGFGFVTYKTPESAKKAIDDPEKTLGGRNIIVKYADSNKGKTGQQPFPAGVVPMAPLPMVPGYVQPGKAHVGDTTPVGYAYPQAVAPYPASSYPGPPIAPSPYPTQGHVLYRPVTSQKDRLGFPAAQPIGMNNYPYYYHKQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1311 336 SMART rrm1_1 65 137 IPR000504 GO:0003723
Lal3g1311 336 SMART rrm1_1 156 228 IPR000504 GO:0003723
Lal3g1311 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 141 IPR000504 GO:0003723
Lal3g1311 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Lal3g1311 336 CDD RRM_RBM24_RBM38_like 64 139 - -
Lal3g1311 336 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 12 336 - -
Lal3g1311 336 SUPERFAMILY RNA-binding domain, RBD 153 244 IPR035979 GO:0003676
Lal3g1311 336 Gene3D - 55 142 IPR012677 -
Lal3g1311 336 SUPERFAMILY RNA-binding domain, RBD 59 141 IPR035979 GO:0003676
Lal3g1311 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 225 IPR000504 GO:0003723
Lal3g1311 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Lal3g1311 336 Gene3D - 143 241 IPR012677 -
Lal3g1311 336 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 12 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1311 Lal-Chr3 18858839 18862977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1311 147 266 C2H2 Transcription Factor Family AT2G19380 33.858 4.47e-16 77.4