Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1305 ATGTTTGTAACAGAAATGGACTCCTCATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCCGGATGCCCATTTGGTGAGAGCTGCCACTTCCTACACTATGTTCCTGGTGGTTATAATGCTGTTGCCCATTTGATGCATATAACGCCACCATCTAGAAATGTCTCAGCCACACCACCTGTCCCGAATGGGTCTGCACAGTCTACCGTTAAAAGCCGCATGTGCAACAAGTTTAATACTGCTGAAGGCTGCAAATTTGGTGACAAATGCCATTATGCCCATGGTGAATGGGAACTTGGCAAGCCTTTTGCTCCATCATTTGATGATCACCGTGCCATGGGACCCCCTTCAGCAAGTCGTATGCCTAGTCGAATGGAGCCACCTCCTGGTGTAGCTGCTAGCTTTGGTGCCAATGCCACTGCCAAGATCAGCGTAGAAGCTTCCCTAGCTGGAGCAATCATTGGGAAGGGTGGCGTGAACTCGAAGCAGATCTGTCGCCAAACAGGAGCCAAACTTTCAATTCGAGATCATGAATCTGATCCAAATCTTAGAAACATTGAACTCGAGGGAAGTTTTGAACAAATCAAGGAAGCAAGTAACATGGTAAAGGAATTACTTTTCACCCTGCAGATGTCTGCACCACCTAAATCGACCCCTGGTGTTCCTGGTGGCCATGCTCCTCCTGGAAGCAATTTCAAGACCAAACTGTGTGATAATTTTGCAAAAGGATCTTGCACTTTCGGAGAAAGATGCCACTTTGCACATGGAGCCGCCGAACTGCGTAAATGA 807 0.4734 MFVTEMDSSSTGVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAHLMHITPPSRNVSATPPVPNGSAQSTVKSRMCNKFNTAEGCKFGDKCHYAHGEWELGKPFAPSFDDHRAMGPPSASRMPSRMEPPPGVAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQIKEASNMVKELLFTLQMSAPPKSTPGVPGGHAPPGSNFKTKLCDNFAKGSCTFGERCHFAHGAAELRK 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1305 268 ProSiteProfiles Zinc finger C3H1-type profile. 14 42 IPR000571 GO:0046872
Lal3g1305 268 Pfam KH domain 147 210 IPR004088 GO:0003723
Lal3g1305 268 SMART kh_6 143 213 IPR004087 GO:0003676
Lal3g1305 268 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 134 216 IPR036612 GO:0003723
Lal3g1305 268 Pfam RNA-binding, Nab2-type zinc finger 84 101 - -
Lal3g1305 268 Pfam RNA-binding, Nab2-type zinc finger 19 39 - -
Lal3g1305 268 Gene3D - 70 107 - -
Lal3g1305 268 Gene3D - 235 268 - -
Lal3g1305 268 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 3 268 - -
Lal3g1305 268 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 268 - -
Lal3g1305 268 SUPERFAMILY CCCH zinc finger 75 106 IPR036855 GO:0046872
Lal3g1305 268 SUPERFAMILY CCCH zinc finger 15 40 IPR036855 GO:0046872
Lal3g1305 268 SUPERFAMILY CCCH zinc finger 237 267 IPR036855 GO:0046872
Lal3g1305 268 ProSiteProfiles Zinc finger C3H1-type profile. 237 264 IPR000571 GO:0046872
Lal3g1305 268 CDD KH-I 146 209 - -
Lal3g1305 268 ProSiteProfiles Type-1 KH domain profile. 144 208 - -
Lal3g1305 268 SMART c3hfinal6 77 102 IPR000571 GO:0046872
Lal3g1305 268 SMART c3hfinal6 237 263 IPR000571 GO:0046872
Lal3g1305 268 SMART c3hfinal6 14 41 IPR000571 GO:0046872
Lal3g1305 268 Gene3D K Homology domain, type 1 140 234 IPR036612 GO:0003723
Lal3g1305 268 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 238 262 IPR000571 GO:0046872
Lal3g1305 268 ProSiteProfiles Zinc finger C3H1-type profile. 75 103 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1305 Lal-Chr3 18804203 18806723 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal3g1305 KH_1 2.1e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1305 - - gmx:100803981 475.707