Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1300 ATGGGGGACGAGACTTCCGATGCAATGAACCTCGATTTGAATCTGGGTCCAGGCCCGGAGCCACCAGCTGGGTCCACAGTCAATGAAGCTATGAACTTGGATGATTGGATTGATGAGCCTCTTAGATTTAGTGAAGCTGTGAGGCTTAGGTCACGGTGGAGATGGCGGCCGCTTCCTATCCCTCCTCCTCCTGCTGTCCATGTTCATTTTCCAGAAGTGCCACGCCATTTGCATTTTCATATACCACCGGAAGCTCGAAATATCTCAATGGAATTGAACCAGTTTCTGGTCAATTCGGGTAATGGAAGTCTCTTACAGGCTGGTGAAGGCAGTGTGGCTGCTGAGGATAGAATTGAGGTGGAGATTCCCAAAGCATGTGAAAGCAATAATGGTGTTTTGGAGAATGAGACAGCGGTGAAGAAGGATGATGTTGAAAAGGGTAGTGGCAATGTTGGGGATTTTTTTGATTGTAATATCTGTTTGGACCTGGCCAAGGATCCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGTCTGTATCGATGGCTGCATTTACATTCAGATGCTAAGGAATGTCCAGTTTGCAAGGGAGAGGTGACTCTAAAGAATGTTACCCCGATATATGGTCGTGGAAACAATGTTCGAGTTCCTGAGGAAGACGCCACTCTTAAAATCCCTCTCAGGCCCCATGCTAGGCGTGTTGAGAGTTTGAGACAAACCCTTCAGGGAACTGCATTCCCTGTCGAAGAGATGATTCGACGTCTTGGAAGCAGAATTGATATTACTAGAGATTTAGTTCAGTCAAATGAACCAGACAACGCTCGTGAAACGGCTGAGAGAACCAGTTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGTATACGGAGAGAGCAGAATGTTGGGGCACCCCCTGATGATGTGCCGGGTTTGCCACAGAATAATCCTCCTGGGGCAGGGGATAGCCGGAGGGAATCCCTTTTGCTTCGAAGAACATCATCAAATAGAGCAAGATATACATCAGCAGCAGTGAGTAGTTCTGCTGAAAGGTTAGTGGATGCATATTTCAGCAGCCATCAATTTGGTAGAAACCAAGAGCAACCTCCTCCAGTTGATGACAGAGATTCCTTTTCAAGCATTGGTGCTGTCATAAATTCTGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTATCCTTGTCAACTTCTAGGAGGAGAAATGATGCTTCAAGAGTCTCTGATGTGGACAGTGGAGATTCTCGTGCTCCTAGGCGAAGACTAGTAGTGATTCTATATTCTGCTAATATGCTTCTCCTCCCTGATACCCTTGTATCGATTGAAAACAAAAGAAAAAACAGGATGATGTGA 1377 0.4582 MGDETSDAMNLDLNLGPGPEPPAGSTVNEAMNLDDWIDEPLRFSEAVRLRSRWRWRPLPIPPPPAVHVHFPEVPRHLHFHIPPEARNISMELNQFLVNSGNGSLLQAGEGSVAAEDRIEVEIPKACESNNGVLENETAVKKDDVEKGSGNVGDFFDCNICLDLAKDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKNVTPIYGRGNNVRVPEEDATLKIPLRPHARRVESLRQTLQGTAFPVEEMIRRLGSRIDITRDLVQSNEPDNARETAERTSSLLSRFLTSRGIRREQNVGAPPDDVPGLPQNNPPGAGDSRRESLLLRRTSSNRARYTSAAVSSSAERLVDAYFSSHQFGRNQEQPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSRRRNDASRVSDVDSGDSRAPRRRLVVILYSANMLLLPDTLVSIENKRKNRMM 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1300 458 PANTHER OS01G0830200 PROTEIN 12 421 - -
Lal3g1300 458 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Lal3g1300 458 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Lal3g1300 458 Pfam Zinc finger, C3HC4 type (RING finger) 157 197 - -
Lal3g1300 458 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 421 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lal3g1300 458 SUPERFAMILY RING/U-box 150 210 - -
Lal3g1300 458 CDD RING-HC_AtRMA_like 155 199 - -
Lal3g1300 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 247 IPR013083 -
Lal3g1300 458 MobiDBLite consensus disorder prediction 294 325 - -
Lal3g1300 458 MobiDBLite consensus disorder prediction 1 23 - -
Lal3g1300 458 SMART ring_2 157 197 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1300 Lal-Chr3 18751714 18754629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1300 1 423 C3H Transcription Factor Family AT3G58030 51.429 4.31e-125 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1300 K10666 - gmx:100811099 595.119