Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1273 ATGGATGAAAGGGTAGGCCAAAACTCAGTTCCTCCTGCAGGTTCTATTGATAAGTATAAGATTCTGGATGTTAAACCAATGCGTAGTATGATACCGGTTTTCTCAATGTCTCCTCAAGCTCCAATCTCTGGTGAGTATCCTTCAGGGTTTAATCCATTTTTCCCATTTGGTGGACCTCAGCCAGCACCACCAAGGGTTCCTGCCACACCAGCTCCGTTACGAGCATATAGGGCTGGAGAAACCTCTGGTTTTGGTAACAAGAAACATGCAGCATCGCATTCCAAATCATCGAAAAAGAAGCATGTTGATAGAACTCCGGTGGTATATACTGATATGGGTTATTTAGTTGGCATTACCCCAGATCTGAGAGAAGACGGTAATCGTGATGTGGTTAATCTTATACTCATGACATTCGATGCACTTCGTAGAAGGCTCTGCCAACTTGAAGATGCCAAGGAATCGAGCACTGGTATAATCAAGCGTGCGGATTTAAAAGCTTGCAATAATTTGATGAGCAAAGGGATTCGGACAAACCAGAGGAAGAGAGTAGGACTAGTGCCTGGTGTTGAGGTTGGGGACATTTTCTTCTTCCGAATGGAATTATGTATTGTTGGTTTGCATGCTCAATCCATGGGTGGAATTGACTCCTTGCATATCAGAGGTGAGTTTGAGGAGGAAACTCTGGCAATAAGCATTGTTTCATCAGGAGAATATGATGACGAGGCAGAGGATAACGATGTTTTAATTTATACTGGTCAAGGTGAGAACTTCAACAAGAAAGACAAGCACCTGACAGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTGGATAGAAGTTCGCGACAACATAATGAAGTAAGAGTCATCCGAGGTATAAAAGAGGGTGCAAATCAAACTTCAAAAATCTATGTCTATGATGGTTTGTATAAAATCGAAGATTCATGGGTGGATAGAGACAAAAGCGGCGGCGGCGGTGTATTTAAATATAAGTTGGTGAGAATGCCTGGACAACCTAGTGGCTTTTCCATTTGGAAATCAATTCGGAAGTGGAAGGCTGGCTTCCCCTCAAGGACTGGACTTATTCTTTCTGACCTCTCCTCAGGAGCTGAGAGTATTCCTGTATCACTTGTCAATGACGTTGATAATGAGAAGGCGCCTGCGTATTTCACTTATTTCCAATCTCTTAGACATCCAAAATCATTCAATTTAATGCAGCCTTCGCACGGCTGCAACTGTGCTAAAGCATGTGCCCCTGGTGATTTGAACTGCTCTTGCATTAGAAAAACTGATGGTGATTTTCCATATATTGGCAATGGCGTTCTCGTGAGTCGGAAGCAATTGGTTCATGAATGTGGCCCTGCATGTCAGTGTTCTCCTAACTGCAAAAATCGAGCATCCCAGTCTGGTTTGAAGTACCATATGGAAGTGTTCAAAACAAAGGATAGAGGTTGGGGTCTTCGATCACTGGATCCTATTCGTGCTGGATCTTTTATTTGCGAGTATGCAGGAGAAGTTATTGATAGGGTCAAGTTAAGTCAACTTGTGAGGGAAAGAGATGATGACTATGTTTTCGACACAACCCGAATTTTTGATACATTCAAGTGGAATTATGAGCCTAGGGTACTGGAAGAAGTGAGTACAAACGACTCCGGTGAGGACTATGCTATACCATATCCTCTAATTGTAAATGCCAAGAGTGTCGGAAATGTAGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAACCTGTCTTATATGAAGAAAACAATCAATCCTTCCTACATGTTGCATTTTTTGCACTCAGGCACATTCCCCCGGTGACAGAGTTCACATATGATTATGGAATTTCCGGTGCTGAGGGTAGCAGTGCGCAGAAAGGCGGAAGAAAGAAATGCTTTTGTGGATCATCAACATGTCGTGACAGGCATACAGTATTGGCTAAAAAGAAGCCAACTTGTGAAACTAAG 1977 0.4269 MDERVGQNSVPPAGSIDKYKILDVKPMRSMIPVFSMSPQAPISGEYPSGFNPFFPFGGPQPAPPRVPATPAPLRAYRAGETSGFGNKKHAASHSKSSKKKHVDRTPVVYTDMGYLVGITPDLREDGNRDVVNLILMTFDALRRRLCQLEDAKESSTGIIKRADLKACNNLMSKGIRTNQRKRVGLVPGVEVGDIFFFRMELCIVGLHAQSMGGIDSLHIRGEFEEETLAISIVSSGEYDDEAEDNDVLIYTGQGENFNKKDKHLTDQKLQRGNLALDRSSRQHNEVRVIRGIKEGANQTSKIYVYDGLYKIEDSWVDRDKSGGGGVFKYKLVRMPGQPSGFSIWKSIRKWKAGFPSRTGLILSDLSSGAESIPVSLVNDVDNEKAPAYFTYFQSLRHPKSFNLMQPSHGCNCAKACAPGDLNCSCIRKTDGDFPYIGNGVLVSRKQLVHECGPACQCSPNCKNRASQSGLKYHMEVFKTKDRGWGLRSLDPIRAGSFICEYAGEVIDRVKLSQLVRERDDDYVFDTTRIFDTFKWNYEPRVLEEVSTNDSGEDYAIPYPLIVNAKSVGNVARFMNHSCSPNVFWQPVLYEENNQSFLHVAFFALRHIPPVTEFTYDYGISGAEGSSAQKGGRKKCFCGSSTCRDRHTVLAKKKPTCETK 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1273 659 ProSiteProfiles SET domain profile. 472 618 IPR001214 GO:0005515
Lal3g1273 659 Pfam SAD/SRA domain 183 337 IPR003105 -
Lal3g1273 659 SUPERFAMILY SET domain 349 626 IPR046341 -
Lal3g1273 659 Gene3D SET domain 355 645 IPR046341 -
Lal3g1273 659 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 644 - -
Lal3g1273 659 Gene3D - 166 353 IPR036987 -
Lal3g1273 659 SMART set_7 472 624 IPR001214 GO:0005515
Lal3g1273 659 Pfam SET domain 483 618 IPR001214 GO:0005515
Lal3g1273 659 ProSiteProfiles Pre-SET domain profile. 408 469 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal3g1273 659 SMART preset_2 362 456 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal3g1273 659 MobiDBLite consensus disorder prediction 78 102 - -
Lal3g1273 659 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 657 IPR025794 GO:0016571
Lal3g1273 659 SMART G9a_1 179 337 IPR003105 -
Lal3g1273 659 Pfam Pre-SET motif 366 464 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal3g1273 659 ProSiteProfiles YDG domain profile. 184 333 IPR003105 -
Lal3g1273 659 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 644 - -
Lal3g1273 659 SUPERFAMILY PUA domain-like 166 355 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1273 Lal-Chr3 18433599 18436486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1273 67 643 Su(var)3-9 homologs AT5G04940 57.633 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal3g1273 SAD_SRA 2.5e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1273 K24405 - gmx:100812173 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0385 5 3892369 3894312 Lal3g1273 3 18433599 18436486 LSH