Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1261 ATGGCCGACCCCATTAACATCCCTTCTGATTCCTTACCCCAATCCCCCTCTCCCTCCGCCGTCAACGACGATCTCCCTCCGCCACCCCATCCTCCGCCTATTCACCCTTCCAGGAGGAGGGACCGCCGTGACGACTACCGCCGTGATTACCACGACCGCAACTTGTCCCCCAGGGACCACCGCGACAGGGACTTCAAGCGCCACCGCAGCCCTAGCCCAAACTACCGTGACCGCCGCTATTCTCCTCCTCCACCTTCACGGCGCTCCCCTCCTCAGTTTAAGCGCCACAGGAGGGGAAGCCCCCGCGGCGGCGGTTATGGCCATGATGACAGATCTGGCTATGATTATGCTGGTGGCTATGAACGGGGAGGCGGTGGAAGGGGCGGAGAGAGGTCTTATGGTGGAAGGTTTGGACATCGATCTGCTGGACGATATCAAAATGGGATTTCTGATGTCAATCGCAGTTATCCAGGCTTGCCAGGTGGTGGTTCACAAAGAGAGGGGTTGATGTCCTATAAGCAATTCATCCAGGAGCTTGAGGATGATATTCTGCCATCTGAAGCTGAGTGTAGGTATCAAGAGTACAAATCAGAGTATATTTCTACTCAAAAGCGAGCTTACTTTAATGCTCATAAGAATGAGGAGTGGTTGAAAGATAAATATCATCCGACAAATTTACTGACAGTAATTGAAAGGAGGAATGAAAATGCTCGAAGGCTGGCAAAGGATTTTTTGCTTGATTTGCAAAGTGGAACACTAGACCTAAATCCTGGTTTAAACAACTCTTCATCCAGCAAATCCGGGCATGTCAGCGAGCCACATTCAGAGGAGGAAACAGATGCTGGTCTTAAACGAAGAAGACATGAGAGGGAACCTAATAAAGATAGTGATTTCCTAGCTGCTCCAAAGGCTCACCCTATTAGTTCTGAACCTAAACGCATACGACAGGATATTCAACAAGCTGAGGCTGTAGTTCATAAGCTTGACATGGAGAAGGGAATTGAAGATAATATTTTATGCACGAGCGATCACAACAAAAATGATGACAAGGCTCACAGTGGATCTGTGGGCCCCACAGTAATTATACGGGGCTTAACATCTGTTAAGGGTTTAGAGGGTGTTGAGCTACTTGACACACTTATTACATATCTTTGGCGGGTTCATGGTGTAGATTATTATGGCATGACTGAGACGAATGAGGCTAAGGGTTTTAGGCATGTAAGACCAGAAGGAGCAGGGCATGAAGAAAAAGGTAAATCAGGGTCTGAATGGGAGATGAAAGTTGATTCGTTTTGGCAGGAAAGGTTGAATGGCCAAGATCCCTTGGAGGTTAGGACTGCTAAGGAGAAGATAGATGCTGCAGCAGTTGAGTTCTTGGATGCATATGTGCGAAAAATTAGGGATGAAAAGTATGGGTGGAAGTATGGTTGTGGGGCTAAAGGCTGCACCAAGCTTTTTCATGCTACTGAATTTGTGCACAAACATCTGAAGCTAAAACACCCAGAGCTTGTCACTGATCTGACTTCAAAATTGAGTGAGGATCTTTATTTCCAAAATTACATGAATGATTCAGATGCACCCGGAGGAACGCCTGTCATGCAGCAACCTCAGAGGGTCAAGTCTCTTAAGCAAAGATTAGGAGGTCTGGATGGCCGATTGAAAGATGATCGTGGTAGTCGGCGAGATCATGATAGAGGTGACAGAATAAATGGAGATAGGCCTGACAATTCCCCATCCGGTGAGAGGCAGTTGGGAAACCATGATGAAGCAATGTATGATGCTTATGGAGGGCCTTCTGTACCTCAGTTTACCCCAGATATGCCCCCTCCTCCCCAAGTTTTGATGCCTGTACCTGGGGCTGGGTTGGTTGCTCTTCCTATTCTTCTGACTCTGATCCACTTTATTATTGCTTTATTGAGATTTTGCTGGTACTTACATAATTTTCAACCCTACAGGCCTTTGGGACCTTTTGTTCCTGCTCCACCAGAAGTTGCAATGCAAATGCTAAGAGAGCAAGGGGGACCACCTTCATACGATGCTCCTGGAAGGAAGATGCGTTCTGGTCCTCATGTGGGTGGATCCGCGCCAATAATTGGTGTTCCTCCTGCTTTTAGACCAGATCCTCGACGGATGCGCAGTTATCAAGATCTGGATGCCCCAGATGACGAAGTCACCGTCATAGATTACCGGAGCTTGTAG 2199 0.4775 MADPINIPSDSLPQSPSPSAVNDDLPPPPHPPPIHPSRRRDRRDDYRRDYHDRNLSPRDHRDRDFKRHRSPSPNYRDRRYSPPPPSRRSPPQFKRHRRGSPRGGGYGHDDRSGYDYAGGYERGGGGRGGERSYGGRFGHRSAGRYQNGISDVNRSYPGLPGGGSQREGLMSYKQFIQELEDDILPSEAECRYQEYKSEYISTQKRAYFNAHKNEEWLKDKYHPTNLLTVIERRNENARRLAKDFLLDLQSGTLDLNPGLNNSSSSKSGHVSEPHSEEETDAGLKRRRHEREPNKDSDFLAAPKAHPISSEPKRIRQDIQQAEAVVHKLDMEKGIEDNILCTSDHNKNDDKAHSGSVGPTVIIRGLTSVKGLEGVELLDTLITYLWRVHGVDYYGMTETNEAKGFRHVRPEGAGHEEKGKSGSEWEMKVDSFWQERLNGQDPLEVRTAKEKIDAAAVEFLDAYVRKIRDEKYGWKYGCGAKGCTKLFHATEFVHKHLKLKHPELVTDLTSKLSEDLYFQNYMNDSDAPGGTPVMQQPQRVKSLKQRLGGLDGRLKDDRGSRRDHDRGDRINGDRPDNSPSGERQLGNHDEAMYDAYGGPSVPQFTPDMPPPPQVLMPVPGAGLVALPILLTLIHFIIALLRFCWYLHNFQPYRPLGPFVPAPPEVAMQMLREQGGPPSYDAPGRKMRSGPHVGGSAPIIGVPPAFRPDPRRMRSYQDLDAPDDEVTVIDYRSL 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1261 732 MobiDBLite consensus disorder prediction 253 269 - -
Lal3g1261 732 MobiDBLite consensus disorder prediction 1 131 - -
Lal3g1261 732 MobiDBLite consensus disorder prediction 545 575 - -
Lal3g1261 732 MobiDBLite consensus disorder prediction 522 585 - -
Lal3g1261 732 MobiDBLite consensus disorder prediction 522 541 - -
Lal3g1261 732 MobiDBLite consensus disorder prediction 270 298 - -
Lal3g1261 732 Pfam SERRATE/Ars2, N-terminal domain 173 255 IPR021933 -
Lal3g1261 732 PANTHER SERRATE RNA EFFECTOR MOLECULE-LIKE PROTEIN 1 623 - -
Lal3g1261 732 PANTHER SERRATE RNA EFFECTOR MOLECULE-LIKE PROTEIN 652 732 - -
Lal3g1261 732 ProSitePatterns Zinc finger C2H2 type domain signature. 477 500 IPR013087 -
Lal3g1261 732 MobiDBLite consensus disorder prediction 685 706 - -
Lal3g1261 732 Pfam Arsenite-resistance protein 2 421 598 IPR007042 -
Lal3g1261 732 MobiDBLite consensus disorder prediction 253 314 - -
Lal3g1261 732 PANTHER ARSENITE-RESISTANCE PROTEIN 2 652 732 IPR039727 GO:0006397
Lal3g1261 732 PANTHER ARSENITE-RESISTANCE PROTEIN 2 1 623 IPR039727 GO:0006397
Lal3g1261 732 MobiDBLite consensus disorder prediction 34 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1261 Lal-Chr3 18229385 18236201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1261 48 732 C2H2 Transcription Factor Family AT2G27100 56.844 0.0 666