Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1257 ATGTCACCTATGCCCTTGTCCCTTCCTCTCTCTTTTCTCTTCCTCTTGTTCCTCTTTGCACCATTACTCCTAGCTCAAACTCCATCTCCTACCCCATCTTCTTCTTCTTCTTCTTCTTCCTACAATGATTGCAAATCCACATTGTATCCAAAACTATGTCGTTCTATACTCTCAGCAATTCGTTCCTCGCCTTCGGATCCATATGGCTATGGCAAATTCTCCATAAAACAAAGCCTCAAACAAGCAAAAAAGCTAGCAAAAGTGTTTGATGACTTCATCAACCACCACAATTCGTCATCATCACTCAACCATGCTGAGGTTGGTGCATTAGGTGACTGCAAAGATCTCAACCAGCTCAATGTAGGTTACTTAGAATCCATATCTGAGGAACTCAAAGATGCTAATTCCTCAGATACTGAGCTGGTTGAGAAAATTGAGAGTTACCTAAGTGCTGTGGCAACTAACCAATACACTTGCTTTGATGGGTTGGTTGTGACAAAGAGTAGCATTGTTATTGCACTTGCTGTGCCACTTAAGGATGTGACACAATTGTATAGTGTGTCACTTGGGTTGGTTAGTGAAGCTCTTAATAGAAACCTAAAGAAGCATAAAACAAGGAAACATGGCCTTCCAACCAAAACCTTCAAAGTTAGGCAACCACTTGAAAAGCTCATCAAGCTTCTCCACACCAAGTATAGTTGCAAGAAATCATCATCCAATTGCACTAGAGCTGAAAGGATTCTTGAAGAAAGTAAAAACCAAGGAATTCTATTGAACCAATTTGTGATTGTGAGTCCTTATGAAACAGATAATTATAGTTCTATAGGAAAAGCTATTGATGCTGCACCAAACAATACAAAACCAGAAGATGGTTATTTCCTAATCTATGTTAGAGAAGGATATTATGAAGAATATGTAATTGTTCCTAAAGAAAAGAAGAATATTCTGCTTATTGGAGATGGTATTAACAAGACTGTTATAACAGGGAACCATAGTGTCATTGATGGTTGGACAACTTTTAATTCTGCCACCTTTGAACCTTCAATTATTGTTAGGTTAAAATTAGTGTTTCAAATTGCGGTTGCGGTCGCGATTGTGGTAATGGTTGTTGCGATTGTGGTCATTGTGGCTGTTGCGATGTGGATTGCAGCCATTGCGAATCACACTACAATTCGCAACCGCAATATTGCTGCTGCATCAGCTGTATCTGGAGAAAGATTTATAGCAGTAGATGTTACATTCAGTAACACAGCAGGTCCTGCAAAACACCAAGCAGTAGCATTGAGAAATAATGCAGATCTCTCAGCATTCTATCATTGCAGCTTTGAAGGATATCAAGACACACTCTATGCTCATTCTCTAAGACAATTCTATAGAGAATGTGATATTTATGGCACAATAGACTTCATTTTTGGAAACTCTGCAGTAGTATTCCAGAACTGTAACATCTATGCTAGAAAACCTTTGCCAAACCAGAAAAATGCTGTCACTGCACAAGGCAGAACTGATCCTAATCAAAATACTGGCATTTCAATCCAAAACTGTAGGATTGATGCTGCACCCGACTTGGCCTCGGACTTAAAATCGACCGCGAATTACTTAGGCCGGCCGTGGAAGGAGTACTCAAGAACAGTTTATCTTCAGTCATATATTGGAGATCTAATTCATCCAAATGGGTGGTTAGAATGGAATGGAACAGTAGGACTAGACACACTTTTTTATGGTGAATTCAATAACTATGGACCTGGTGCTAAAACTAACAATAGGGTACAATGGCCTGGTTTTAGTTTACTCAATGATACTCAAGCTTGTAACTTTACAGTTCTTAACTTTACTTTGGGGAATACATGGCTTCCTGATACAGATATTCCTTACTCTGGAGGGTTACTGAATTAG 1896 0.3919 MSPMPLSLPLSFLFLLFLFAPLLLAQTPSPTPSSSSSSSSYNDCKSTLYPKLCRSILSAIRSSPSDPYGYGKFSIKQSLKQAKKLAKVFDDFINHHNSSSSLNHAEVGALGDCKDLNQLNVGYLESISEELKDANSSDTELVEKIESYLSAVATNQYTCFDGLVVTKSSIVIALAVPLKDVTQLYSVSLGLVSEALNRNLKKHKTRKHGLPTKTFKVRQPLEKLIKLLHTKYSCKKSSSNCTRAERILEESKNQGILLNQFVIVSPYETDNYSSIGKAIDAAPNNTKPEDGYFLIYVREGYYEEYVIVPKEKKNILLIGDGINKTVITGNHSVIDGWTTFNSATFEPSIIVRLKLVFQIAVAVAIVVMVVAIVVIVAVAMWIAAIANHTTIRNRNIAAASAVSGERFIAVDVTFSNTAGPAKHQAVALRNNADLSAFYHCSFEGYQDTLYAHSLRQFYRECDIYGTIDFIFGNSAVVFQNCNIYARKPLPNQKNAVTAQGRTDPNQNTGISIQNCRIDAAPDLASDLKSTANYLGRPWKEYSRTVYLQSYIGDLIHPNGWLEWNGTVGLDTLFYGEFNNYGPGAKTNNRVQWPGFSLLNDTQACNFTVLNFTLGNTWLPDTDIPYSGGLLN 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1257 631 SUPERFAMILY Pectin lyase-like 260 345 IPR011050 -
Lal3g1257 631 Pfam Plant invertase/pectin methylesterase inhibitor 44 190 IPR006501 GO:0004857
Lal3g1257 631 PANTHER PECTINESTERASE 397 629 - -
Lal3g1257 631 PANTHER PECTINESTERASE 11 347 - -
Lal3g1257 631 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 195 IPR035513 -
Lal3g1257 631 SUPERFAMILY Pectin lyase-like 387 628 IPR011050 -
Lal3g1257 631 ProSitePatterns Pectinesterase signature 2. 463 472 IPR033131 -
Lal3g1257 631 SMART PMEI_2 35 191 IPR006501 GO:0004857
Lal3g1257 631 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 193 IPR035513 -
Lal3g1257 631 CDD PMEI-like_3 44 194 - -
Lal3g1257 631 Pfam Pectinesterase 395 614 IPR000070 GO:0030599|GO:0042545
Lal3g1257 631 Pfam Pectinesterase 262 345 IPR000070 GO:0030599|GO:0042545
Lal3g1257 631 Gene3D - 260 631 IPR012334 -
Lal3g1257 631 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 192 IPR006501 GO:0004857
Lal3g1257 631 PANTHER PECTINESTERASE 11 347 - -
Lal3g1257 631 PANTHER PECTINESTERASE 397 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1257 Lal-Chr3 18176046 18182871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1257 44 631 Carbohydrate Esterase AT3G10720 55.254 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1257 K01051 - gmx:100816503 754.977