Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1255 ATGGCTTTGAGGTTTATAGCGATTTCGGCAATTTCAACAGTGCTAAGCTTTGTCGGTCTGAAGTTTTGCTCAGACTTCTCGTTACATACACTTAAACCAGATGGACTAATTCGATGGAATCTAGTGCACTTGGACAATGCTAACCATGACACCAAGTTACCTTCGGGTTTGTTCATGACCATAGGGCTACTGGTGAATTGCATTATCAATGTATTTATCCTTCTCAATCTTTGTCTTAAGGCTATGTTCTTCACAGAGTTGTATTCTTCTGAAAGTCATAAACTGATTGAGCGTCTCATTAATTATGTCGTTTATAAGGGAACATTCCTACCACTGATTGTGCCACCAACTATATATCATGCTGGTCTTTGGTCAACTTGGTTGGCTGTGCTTTGTTCTTTAAAGATGTTTCAAGCTTTAGCTAGAGATCGTTTGGAGAGGCTGAATGCATCTCCATCTGCTACACCCTGGACATATTTCCGCGTATATTCAGCACTGTTGTTCATTTTCTTGGTTGACGTTCTCTGGATAAGGCTATGTCTGGCGATATTTAGAACAAATGGGTCCTCTTTGTTTCTGTTACTATTCTTTGAGCCTTTCAGTATTGCTTTTGAAACCCTACAGGCCATTTTGGTACATGGATTTCAGTTATTTGATATATGGTGCAGCAGCAGTGATTGTGGACGGTCTAAACTGTTTGACTCATTAACAGCAGGTTCACTATTGGAATGGAAGGGATTTCTAATTCGGAACTTGGGATTTTTCCTAGACATGGCAACATTTTTTATGGCACTAGGCCATTACCTGTATATATGGCGGCTTCATGGCATGACATTCCATCTTGTAGATGCAGTGCTATTTCTAAACATACGTGCATTACTTGGTGCAATTATAAATCGCATAAAAGGCTTTATTAGGCTTCGGATAGCTCTAGGAGCTCTTCATGCAGCTCTTACTGATGCAACGACTGAGGAGCTTAGAGCATATGATGATGAATGTGCTATTTGTAGAGAACCCATGGCTAAGGCTAAAAGGCTAAACTGCAATCACCTCTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCTACATGCCGAAAGCCTCTTTTTGCAGGCCAGCCTGAAAATGAAGCAAACTCTACTACAGAGGAGATATCTAGCGATGAGCAACTTGCACACCAAATAAGTGCAGGACTTGATCGGGCAAACTCTGCTAGACAAAACAGTCCTGCAGGATTGTATCCCAATCAGACACCAAATACTGTGGAAGATGTTTCTTGGAGGGGTGCAGGACTCAATGCAGGTTGGTTGCATTCATGGCCAAATGAAGGCGTTGATGGAGCTGGCCCATCTACTGCAATCAGAACAGTTGGACTAGGAAGAGTTCAAACGATGATGAGGCATCTTGCATCTGTTGGAGAAACCTATGCTCAGACTTCCTTTGAAGATGCTGCTTGGAGCCTTTGGCCTATTAATCCGTCTCAGGCTTCTGCAAGTGGTTCAACCATTCCTTCCCCTAGTGGACAATTGCCCGGAGGAAATGGCAGTTTACATATAAGGACTGCTTCACAATCTGCAAATGATGATTTGGCGAATATACTTGCCATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCAGATGACTTAATATTCCAGGACTTGCAGAGGACATATTCTGTCTCAGTTACTGTGAATAATCTTCTCCAAATGTGA 1746 0.4233 MALRFIAISAISTVLSFVGLKFCSDFSLHTLKPDGLIRWNLVHLDNANHDTKLPSGLFMTIGLLVNCIINVFILLNLCLKAMFFTELYSSESHKLIERLINYVVYKGTFLPLIVPPTIYHAGLWSTWLAVLCSLKMFQALARDRLERLNASPSATPWTYFRVYSALLFIFLVDVLWIRLCLAIFRTNGSSLFLLLFFEPFSIAFETLQAILVHGFQLFDIWCSSSDCGRSKLFDSLTAGSLLEWKGFLIRNLGFFLDMATFFMALGHYLYIWRLHGMTFHLVDAVLFLNIRALLGAIINRIKGFIRLRIALGALHAALTDATTEELRAYDDECAICREPMAKAKRLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFAGQPENEANSTTEEISSDEQLAHQISAGLDRANSARQNSPAGLYPNQTPNTVEDVSWRGAGLNAGWLHSWPNEGVDGAGPSTAIRTVGLGRVQTMMRHLASVGETYAQTSFEDAAWSLWPINPSQASASGSTIPSPSGQLPGGNGSLHIRTASQSANDDLANILAMAETVREVLPHIPDDLIFQDLQRTYSVSVTVNNLLQM 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1255 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 384 IPR013083 -
Lal3g1255 581 ProSiteProfiles CUE domain profile. 541 581 IPR003892 GO:0043130
Lal3g1255 581 Gene3D - 540 580 - -
Lal3g1255 581 SUPERFAMILY RING/U-box 319 381 - -
Lal3g1255 581 MobiDBLite consensus disorder prediction 409 429 - -
Lal3g1255 581 Pfam Ring finger domain 331 375 IPR001841 -
Lal3g1255 581 SMART ring_2 333 374 IPR001841 -
Lal3g1255 581 Pfam CUE domain 545 581 IPR003892 GO:0043130
Lal3g1255 581 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 581 - -
Lal3g1255 581 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 581 - -
Lal3g1255 581 ProSiteProfiles Zinc finger RING-type profile. 333 375 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1255 Lal-Chr3 18164341 18171570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1255 69 385 C3H Transcription Factor Family AT3G16090 28.144 2.94e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1255 K10636 - gmx:100819656 980.704