Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1249 ATGGACAAGGCAAGTTGTTTAACTCTTATATCCTTTCTTATTTTCTCATTCTTTATGGCTGAAATCCATGGAAGAAATCAAGGTGAAGTTTTTGACAAGTTTCAAAAGTCAAAATACATAGTAGATTCACAAATTGATAGGAGTGACTTCAATGCACAAGAGGTTGTGGTTGATTATCACATTGTTCATTCTCATAAGGGTCTTAAAGAGAAAGATATGATTGATAAATTGCCAGGGCAACCACATGTGAATTTCTCTCAATATGGAGGGTATGTCACAGTTGATAAATTGGCAGGGCGTGCCCTTTATTATTACTTTGTGGAATCTCAACATTCTAAAGAAAAAATGCCTCTTCTTCTTTGGCTAAATGGAGGTCCGGGATGTTCATCTCTTGCTTATGGAGCAATGGAAGAACTTGGACCCTTTAGAGTAAATAGTGACGGAAAGACACTTACGAAAAATAGATATTCATGGAACTATGCTGCAAATGTTTTGTTCCTTGAGTCACCTGGTGGAGTAGGATTTTCTTACTCAAATAAATCATCAGATTATGATACTAGTGGGGATAGAAAAACAGCAACAGATAACTATATATTCTTAGTGAATTGGTTTGAGAGGTTTCCCGAGTATAAGAAGAGAGATTTCTACATTGCTGGAGAAAGCTATGCTGGACATTATGTCCCTCAACTAGCTCATACTATTCTACACAATAACAAAAAGGCTAACAAGTCAAAAATCAACCTCAAAGGAATCATGATTGGGAATGCAGTGATCAATGATGAAACAGACAACCGAGGAACGTATGATTATCTTGCTAGTCATGCAATCATTTCAGACCAAGCAGCGAATGATATTAACACATTCTGTAATTTCTCATCCAATGTCAATCCAATTCAGTGCCAAACAGCCATAAATGAATATGATCGAGATGTATCCTTCATTGATAGCTACAACATTTATGCACCACTTTGCAATAATTTCGACCTCACTGCCCTTCCCAAGAATAACTCTATTGTTTTTGATCCATGTAGTGGTGTTTATATCAATGCATATCTTAACCGTGCTAATGTTCAAGAGGCCTTACATGCCAATGTCACCAAACTCAAATATGAGTGGGTATCCTGCAGTGATATTATATTTTCAAAGTGGGTTGATAGCCCTTCAACAATTATTCCCCTTTTACATGAATTCCTCAATAATGGACTCCGAGTTTGGATTTTTAGTGGTGACACAGATGGAGTAGTGCCCGTTACTTCAACTAAGTATTCCATTAAAAAGATGAATCTCTCCACTGAAACTTCTTGGTATCCATGGTTCTTCAACGGAGAGGTTGGTGGGTATGTTGAAGTGTATAAGGGAGGCCTAACTTTTGCAACAGTGAGAGAAGCAGGGCATAAAGTTCCTAGCTTCCAACCAGGAAGAGCACTTTCATTGATTATGCACTTCTTAAAGGGCACTCTACTTCCCACTACTAAAAGACAAGTTTAA 1488 0.375 MDKASCLTLISFLIFSFFMAEIHGRNQGEVFDKFQKSKYIVDSQIDRSDFNAQEVVVDYHIVHSHKGLKEKDMIDKLPGQPHVNFSQYGGYVTVDKLAGRALYYYFVESQHSKEKMPLLLWLNGGPGCSSLAYGAMEELGPFRVNSDGKTLTKNRYSWNYAANVLFLESPGGVGFSYSNKSSDYDTSGDRKTATDNYIFLVNWFERFPEYKKRDFYIAGESYAGHYVPQLAHTILHNNKKANKSKINLKGIMIGNAVINDETDNRGTYDYLASHAIISDQAANDINTFCNFSSNVNPIQCQTAINEYDRDVSFIDSYNIYAPLCNNFDLTALPKNNSIVFDPCSGVYINAYLNRANVQEALHANVTKLKYEWVSCSDIIFSKWVDSPSTIIPLLHEFLNNGLRVWIFSGDTDGVVPVTSTKYSIKKMNLSTETSWYPWFFNGEVGGYVEVYKGGLTFATVREAGHKVPSFQPGRALSLIMHFLKGTLLPTTKRQV 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1249 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 154 166 IPR001563 GO:0004185|GO:0006508
Lal3g1249 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 177 IPR001563 GO:0004185|GO:0006508
Lal3g1249 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 203 228 IPR001563 GO:0004185|GO:0006508
Lal3g1249 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 455 468 IPR001563 GO:0004185|GO:0006508
Lal3g1249 495 Pfam Serine carboxypeptidase 79 485 IPR001563 GO:0004185|GO:0006508
Lal3g1249 495 PANTHER CARBOXYPEPTIDASE 9 489 - -
Lal3g1249 495 Gene3D - 343 381 - -
Lal3g1249 495 Gene3D alpha/beta hydrolase 68 326 IPR029058 -
Lal3g1249 495 ProSitePatterns Serine carboxypeptidases, serine active site. 217 224 IPR018202 GO:0004185
Lal3g1249 495 SUPERFAMILY alpha/beta-Hydrolases 71 489 IPR029058 -
Lal3g1249 495 Gene3D - 390 485 - -
Lal3g1249 495 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 9 489 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1249 Lal-Chr3 18061996 18065882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1249 351 488 Calmodulin-binding Proteins AT2G22960 28.261 5.06e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1249 K16297 - gmx:100783864 687.952