Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1231 ATGGCCATAAACGACAGGCCGTTTAAGAAGGCTAAGAAAACGGTTACTACCGACTTTCACGATTTTTTTACTTTCCCCGCCGCGATTCACGACGGAGCCGCCGTTAATGAACCGTTCCGGTGCAACGTTCACCGTTTCCTCAAAAACCATGCACGCCTCACTTTTCCGCCGTCGTTTTTTCCGTCGCTGATGACGTGGCAGATATTGTTCCGTGTTACTGGACCCGATCTTTCGGTGGAGACGGTTGCGCTTGATATTGTGGAAGAAGACGTGACTCGCTCTCGTGGCTCAGTTTATTGCGATCAGTGCCGAGTTGTTGGGTGGAGTGGTCATCCAGTGTGTAGAAAGAGATACCATTTCATAATTAGGTCTGATTCAAGTGATGCAATTGAACCTTATCAACGACCTTGTTCAAGATGCACCAATCTTGTTCAATTATCTGAACCAAGGTGTAAATGGTGTAACTATGCAATTACAGTTGATGATCTTGAGGATTGGGTGTATCTTCAAATTGAAGATAATACCCATCTTCTGCATGGTGTTGTTCATTCCAATGGTTATGGTCACTTGCTTACTCTTAATGGAAGAGAAGGTGGTTCAAAGCTTCTATCAGGATCTCATATTATGGGTTTTTGGGATAGGCTCTGTGCTAAACTTGCTGTTAGGAAGGTTAGTGTGATGGACTTGTCGAAGAAATTTGGGCTTGAGTTTAGATTGCTTCATGCTATCACTAATGGGTGTTCCTGGTATGGCAATTGGGGTTATGAATTTGGTACTGGCAGTTATGCTCTTACTCAAGATGCCTACCAGAATGCAGTGAATGCTCTGTCAAGCTTGCCATTGTCCTCTTTTTTGTTTGAGGGAAGGGGACCTCGAGGCCGCCTACAGTCAGTGATTTCTCTTTACCAATCTTTGGCGGACGTGGAACTTCTAACAATTAAAGACCTCTTCTCTTTTGTGTTGAAGCTGATAAGTGAAGTCCGCAAGCCCCTGACCACAATCACTTCTAATGTCATGTGTGCTTGGACAAGTAATGATGTTCAAGATGTGCAACAAGCTTTAATCAAAGTGTTGCTTGCATCCGGTACCTATAATGAGAACAAATGGGTGAGTAGGCGTGCTCTCAAGGGTGCAGTGTGTAGGAGGATTGCATCTCCCGAGCTTCTAGATTATAGTGTCAAACACTTGAGAGGGAAAATAGCTTCCAATGGAATGGTAGTTTGTTCACAATGCAATCCTATCTCTAGTGTTGTGGAGTTCAGACTTGAACCATTGAGTTTTGTGCAAAATGGATTAGTTGCCATGCCCAGTTATCCATCAATAGAGCAAATGATATCTGATCTGAGATTTTTGTTTGATCAAATTATTCACCCGGACAAAATCGAGAGCAAGGGGCTTCAGATAATGAAGAAGTTGATGTCTAATTCAGCGAGGAAGCTCTTAGACTGTAAGCAGTTTATGAAGGATTACAAACCTGGAAAATTTGCAGAAGAGCCACCGTCTGCTATTAGACTGTGGTGTCATGTCGAGCTTTCCGATCAGCCTAAAGATGATCCATCCCCACCTCCAGAGTTGATTGTCTTGCCTCTGAATGCTACTGTCGCGACCCTTAAAAGCAAAGTCACTAACGTTTTTCAAGAAGTATATGCAATGTATAAGAGGTTTCAAGCTGACAAACTCCTTGGATATGGATCAACCAGCGATGCATTCACCGTGAAGTTCCTGGTTGGAACAAGTGGGTCCATTCGAGTTCAAGGCAAATGTGCCACCAAACACGGGCTGAGCCGATTCCGAATGGAAAGAGGAACAGAGGCATGGAAAGTGGATTGTCAATGCGGGGCAAAGGATGATGATGGAGAAAGGATGTTAGCATGTGATAGCTGTGGTGTTTGGCAGCATACTAGATGTGTTGGGATTGATAATTCTAATGACATTCCTTCAAAGTTTATGTGTGTGAAATGTATCTCCCAGGTATCTGGAAAACCACCGGTCTCCGATGATGATAGTAACAACAATGCTTGTAAATCCAACACAACCTGCAGAGGTGAAGTGGTGGCTACAGATAATACAATAGTTGCTTGCAACATGACTGTAAATTTTGATGTACGTTGA 2112 0.4347 MAINDRPFKKAKKTVTTDFHDFFTFPAAIHDGAAVNEPFRCNVHRFLKNHARLTFPPSFFPSLMTWQILFRVTGPDLSVETVALDIVEEDVTRSRGSVYCDQCRVVGWSGHPVCRKRYHFIIRSDSSDAIEPYQRPCSRCTNLVQLSEPRCKWCNYAITVDDLEDWVYLQIEDNTHLLHGVVHSNGYGHLLTLNGREGGSKLLSGSHIMGFWDRLCAKLAVRKVSVMDLSKKFGLEFRLLHAITNGCSWYGNWGYEFGTGSYALTQDAYQNAVNALSSLPLSSFLFEGRGPRGRLQSVISLYQSLADVELLTIKDLFSFVLKLISEVRKPLTTITSNVMCAWTSNDVQDVQQALIKVLLASGTYNENKWVSRRALKGAVCRRIASPELLDYSVKHLRGKIASNGMVVCSQCNPISSVVEFRLEPLSFVQNGLVAMPSYPSIEQMISDLRFLFDQIIHPDKIESKGLQIMKKLMSNSARKLLDCKQFMKDYKPGKFAEEPPSAIRLWCHVELSDQPKDDPSPPPELIVLPLNATVATLKSKVTNVFQEVYAMYKRFQADKLLGYGSTSDAFTVKFLVGTSGSIRVQGKCATKHGLSRFRMERGTEAWKVDCQCGAKDDDGERMLACDSCGVWQHTRCVGIDNSNDIPSKFMCVKCISQVSGKPPVSDDDSNNNACKSNTTCRGEVVATDNTIVACNMTVNFDVR 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1231 703 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 671 - -
Lal3g1231 703 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 671 - -
Lal3g1231 703 SMART PHD_3 609 655 IPR001965 -
Lal3g1231 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 660 IPR013083 -
Lal3g1231 703 SUPERFAMILY FYVE/PHD zinc finger 599 656 IPR011011 -
Lal3g1231 703 Pfam PHD-finger 610 656 IPR019787 -
Lal3g1231 703 ProSitePatterns Zinc finger PHD-type signature. 610 654 IPR019786 -
Lal3g1231 703 CDD PHD_MMD1_like 609 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1231 Lal-Chr3 17848955 17852409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1231 82 654 PHD Transcription Factor Family AT5G22260 28.852 4.35e-83 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal3g1231 PHD 1.7e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1231 - - gmx:100780558 1007.67