Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1226 ATGGCTGGGATAGATGATAATGTGGCTCTAGCTGGCGATTTTGGTTCTTCAATTCCGAGCCCGAGAACCTTTTTTTCTAGAATGCTTGGTGAAGATCATGTAACAAGATCAATCCCAGACCCTCCTGGAAGTGGTAGAACTGGGTTTTGGACTCATGAACAGGCCGAGTCAGGGAAAGGAGACATAAAAGATAGCTCACAAGATGGTGATTTTGGTGACCAATTGACCGAGACGAGTTTTCTGAATGATCAGAAATGGAATTCGCGAGGAGGTCTTGTTGAAAGGATGGCTGCTAGAGCTGGGTTTAATGCTCCGAGGTTGAATACTGAAAGCATTAGATCTACTGATCTTACACTTAATCCTCATAATCAATCTCCTTACTTGACCATTCCGCCGGGTCTTAGTCCGACTACACTTTTGGATTCTCCGGTGTTCCTTGCTAATGCACTGGCACAGCCATCTCCAACAACTGGAAAGTTTCCATTCATCTCAAATGGCGACTTCCGGTACTCAGAAATATCATCTGATGATCCTGAAAAATCTAAAGATAACCTTGATGATTTGTATGCATCATCCTTCGCTTTCAAGCCTGCAATAGATTCGGGCTCATCTTTTTATTATGGCACTGCAGGGGAACTAAATCTAACTACAGTTCCACAACAATCTGTTCCTGGTATTGAGACCTCTTTTCAGTCAGAAGATTCTTTCCAATCTCTAAATGTTGATGCAGTCAATGATCAATCTAAGAACGATAGTGGTCTCCATTATCAGCCAGACTTTATCGAGTCGCCTCCACAAAAAGATAACGGAGTCAAATCTTTCTCAGGTGATAAAAGGGCACGTTCCGCACCACCTGAAGAGCAAGCAAATGAAGAGGGAGATCAAAGAGTGAATGGAGACTCAACGGTTGCTGGTGTTGGTGGTAAGCCGGCTGAAGATGGATACAACTGGAGAAAATATGGCCAAAAGCAAGTTAAGGGCAGCGAGTATCCACGTAGTTACTATAAGTGTACTCATCCAAATTGTCTAGTTAAGAAGAAAGTGGAGCGATCTCACGAGGGCCACATAACAGAGATCATCTATAAGGGAGCACACAACCATCCCAAAACTCCAAATCGCCGGTCTGGCATAGGGTCAGTCAACCCTCATACAGAGATGCAATTGGATAATCCTGAACATTTTGAACCACAGAATGGTGGTGACGGTGACCTGGGCTGGGCTAATGTACAAAAGGGAAATATAGCTGGATCGGCTAATTGGAAGCATGACAACCCTGAAGTGACATCATCGGCATCTGTTGGCCCTGAATACTGCAACCACTCCACCAATTTGCAGACTCAGAATGCTACTCACGTTGATTTAGGGGATGCAGTGGATGCCTCGTCTACTTTTTCTAATGAAGATGAAGATGACCGAGGCACTCATGGTAGTGTCTCATTAGGTTATGATGGGGAAGGAGATGAATCAGAATCTAAAAGAAGGAAACTGGAATCTTATGCAGCAGAGTTGAGTGGAGCTACAAGAGCTATTCGCGAGCCTAGAGTTGTTGTACAGACTACCAGCGAAGTAGATATCCTCGATGATGGGTATCGCTGGCGAAAGTATGGGCAAAAAGTTGTCAAAGGAAATCCCAATCCAAGGAGTTACTACAAGTGCACCAGTGCTGGCTGCACGGTGAGGAAGCACGTTGAGAGAGCATCACATGACCTTAAATCTGTGATCACTACCTACGAGGGAAAGCACAATCACGATATTCCGGCTGCTCGCGCTACCAGCCATGTCAATGCTGCCGCATCCAGCGCTGTTCCAGGACAAGGTCATGTTCATAGACCTGAACCATCTCAAGTTCACAATGGCATTGGAAGGCTCGAGAGGCCTTCCCTGGGCTCATTCAACCTACCTGGCAGCCTGCAGCTAGGACCTCCCCACGGCTTCTCCTTCGGTATGAACCAATCTATGCTCTCAAATCTGAGAATGCCAGGATTTGGATCCGGGCACGGAAAGCTTCCTAGCATGCATGTTCATCCATTCTTGGCACAACAACGCCCGACGACGTCAAATGAAATGGGTTATATGTTACCAAAGGAAGAGTCAAATGTGGAACCTATTCCTGAACATAGGTCATCAATATATCAAGAAATTATGAATCGCATGCCTCTTGGACCTCACATGTAA 2175 0.4547 MAGIDDNVALAGDFGSSIPSPRTFFSRMLGEDHVTRSIPDPPGSGRTGFWTHEQAESGKGDIKDSSQDGDFGDQLTETSFLNDQKWNSRGGLVERMAARAGFNAPRLNTESIRSTDLTLNPHNQSPYLTIPPGLSPTTLLDSPVFLANALAQPSPTTGKFPFISNGDFRYSEISSDDPEKSKDNLDDLYASSFAFKPAIDSGSSFYYGTAGELNLTTVPQQSVPGIETSFQSEDSFQSLNVDAVNDQSKNDSGLHYQPDFIESPPQKDNGVKSFSGDKRARSAPPEEQANEEGDQRVNGDSTVAGVGGKPAEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCLVKKKVERSHEGHITEIIYKGAHNHPKTPNRRSGIGSVNPHTEMQLDNPEHFEPQNGGDGDLGWANVQKGNIAGSANWKHDNPEVTSSASVGPEYCNHSTNLQTQNATHVDLGDAVDASSTFSNEDEDDRGTHGSVSLGYDGEGDESESKRRKLESYAAELSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHDIPAARATSHVNAAASSAVPGQGHVHRPEPSQVHNGIGRLERPSLGSFNLPGSLQLGPPHGFSFGMNQSMLSNLRMPGFGSGHGKLPSMHVHPFLAQQRPTTSNEMGYMLPKEESNVEPIPEHRSSIYQEIMNRMPLGPHM 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1226 724 MobiDBLite consensus disorder prediction 245 310 - -
Lal3g1226 724 MobiDBLite consensus disorder prediction 33 75 - -
Lal3g1226 724 Pfam WRKY DNA -binding domain 312 368 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal3g1226 724 Pfam WRKY DNA -binding domain 527 583 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal3g1226 724 PANTHER WRKY TRANSCRIPTION FACTOR 2-RELATED 103 656 - -
Lal3g1226 724 SUPERFAMILY WRKY DNA-binding domain 310 369 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal3g1226 724 ProSiteProfiles WRKY domain profile. 312 370 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal3g1226 724 MobiDBLite consensus disorder prediction 416 441 - -
Lal3g1226 724 MobiDBLite consensus disorder prediction 272 294 - -
Lal3g1226 724 MobiDBLite consensus disorder prediction 56 70 - -
Lal3g1226 724 Gene3D WRKY domain 513 579 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal3g1226 724 Gene3D WRKY domain 304 370 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal3g1226 724 MobiDBLite consensus disorder prediction 461 495 - -
Lal3g1226 724 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 103 656 IPR044810 GO:0003700
Lal3g1226 724 ProSiteProfiles WRKY domain profile. 521 586 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal3g1226 724 SUPERFAMILY WRKY DNA-binding domain 518 586 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal3g1226 724 SMART WRKY_cls 526 585 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal3g1226 724 SMART WRKY_cls 311 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1226 Lal-Chr3 17771119 17775712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1226 1 719 WRKY Transcription Factor Family AT5G56270 48.153 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal3g1226 WRKY 3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1226 K18835 - gmx:100127395 1114.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1226 3 17771119 17775712 Lal3g1226 3 17771119 17775712 ECH
Lal5g0439 5 4390777 4394845 Lal3g1226 3 17771119 17775712 LSH