Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1224 ATGCCGGAAAGTGATCAGAATCGTCTTCTGGGGTCATCGGAAGTTGAAGAGCATGACGTGGAAGCTCAAACCTCCGACCTCGCCGCCGTGAATGGCGGTGGTAGCCGCAGAGGGTTCATTGATTTGCTTAGATTCTCTGGTCACCGCCACAGTTTCAAGCGTTTAGAGAAAGATGGTGATAGAGAAAGAAGAGATCGTAATAATTATAATCATAATTCGCATTTGGATCTTCATAATGATGATGATGATGATTCTGGTGATGTGCTTGGTGATAGTGCACCTCCTGAATGGGTTTTGCTTCTTCTTGGTTGCCTCCTTGGTCTTGCCACTGGACTCTTTGTTGCTGCTTTCAATAAAGGGGTGCATCTAATACATGAATGGGCCTGGGCTGGTACTCCAAATGAGGGTGCTGCTTGGCTTCGTTTACAAAGATTGGCTGATACATGGCATCGAATCCTTTTGATACCTGTCTTCGGAGGAGTCATTGTCGGCATGATGCATGGCTTACTAGAAATACTTGACCAAATAAAGCAGTCCAGTTCCTCTCAAAGGCAAGGTTTTGATTTGCTTTCAGGAGTCTATCCAACAATAAAGGCTATCCAGGCTGCAGTTACTTTAGGTACTGGCTGTTCTTTGGGTCCTGAAGGTCCTAGTGTTGATATTGGAAAGTCATGTGCCACTGGATTCTCATTAATGATGGAAAACAACAGAGAAAGAAAAATAGCACTCGTTGCGGCTGGTGCAGCAGCTGGAATTTCTTCAGGCTTCAATGCAGCAGTTGCGGGTTGTTTCTTTGCTATTGAAACTGTGCTGAGGCCACTTCGTGCAGAGAACTCTCCCCCATTTACAACCGCCATGATTATATTGGCTTCTGTTATCTCATCAACTGTATCAAATGTTTTACTGGGAACCGAATCAGCTTTTACAGTGCCTGCATATGATCTTAAATCTGCTGCTGAGCTACCTTTATACCTGATATTGGGAATGCTATGTGGTGTTGTAAGCGTAGCCATGACTCGCTTGGTTGCTTGGTTCACCAAATTGTTTGAGGTTATCCAAGAGAAATTTGACCTTCCTACTGTGGTATGCCCTGCTCTAGGTGGTCTAGGAGCTGGGATCATCGCTCTTAAATATCCTGGAATATTGTATTGGGGTTTCACAAATGTGGAAGAAATTCTACATACCGGAAAGAGTGCTTCAGCTCCTGGAATATGGTTGTTGACTCAATTAGTGGCCGCAAAGGTTATTGCGACAGCTCTTTGCAAGGGATCTGGACTTGTAGGTGGTCTTTATGCACCAAGTTTAATGATTGGTGCTGCAGTTGGTGCTGTATTTGGAGGCTTCGCTGCTGAAGTTATCAATTCAGCAATTCCTGGAAATGCTGCTGTTGCCCAACCCCAGGCATATGCTCTGGTTGGAATGGCTGCTACATTAGCATCTGTTTGTTCAGTTCCCTTGACTTCAGTTCTACTTCTGTTTGAGCTAACAAAAGATTACAGGATATTGCTTCCTCTCATGGGGGCTGTTGGACTGGCAATATGGGTTCCCTCAGTGGCAAACCAGACAAAGGAGAGTGACACATCTGATAGAAGAAACTCAGCAAGAGGGTATTCTTCAATTTCACATGCTGAAGATAATGAAGGTAACTGGAGAGAAGCTCACAATGGGGATGGTTTAGAACTCAGTGTTATTGAAGATGCTGCTAATCTTGAATCAGTTGATGAGGAATTGCTTCTGGAAAATCTTAAGGTCTCTCAAGCCATGTCTAAGAACTATCTGAAGGTTTTATCATCTGTAACCCTGAAAGATGCAATCAAATGCATTCGTGACAGCCAGCAGAATTGTGTGCTGGTAGTTGACGAGGACGATTTTCTAGAAGGAATATTGACATATGGTGACATTAGAAGGTGTCTGCCCGAGAAGTCTAATGATACTTCCAAGAATGGTTCAAGGCTTGTGGATGACACATGCCTTGTTTCCTCTGTTTGTACTCGAGGGATGAGCTATCGTGGACGAGAGCGTGGACTTCTAACATGTTACCCAAATACTAGTTTGGCTATGGCCAAAGAGTTAATGGAGGCCAAGGGTATTAAGCAATTACCAGTGGTTAAACATGGTGTAGATCACAGTCGAGAGCGGAAGCGAAGAATCGTTGGTCTTCTTCATTATAACGCACTATGGATTTGTCTCAGGAAAGAGATTAATCACAGGAAGTTAGCATATCAAAATAGGACATAA 2238 0.4379 MPESDQNRLLGSSEVEEHDVEAQTSDLAAVNGGGSRRGFIDLLRFSGHRHSFKRLEKDGDRERRDRNNYNHNSHLDLHNDDDDDSGDVLGDSAPPEWVLLLLGCLLGLATGLFVAAFNKGVHLIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVFGGVIVGMMHGLLEILDQIKQSSSSQRQGFDLLSGVYPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCATGFSLMMENNRERKIALVAAGAAAGISSGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLLGTESAFTVPAYDLKSAAELPLYLILGMLCGVVSVAMTRLVAWFTKLFEVIQEKFDLPTVVCPALGGLGAGIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLVAAKVIATALCKGSGLVGGLYAPSLMIGAAVGAVFGGFAAEVINSAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVANQTKESDTSDRRNSARGYSSISHAEDNEGNWREAHNGDGLELSVIEDAANLESVDEELLLENLKVSQAMSKNYLKVLSSVTLKDAIKCIRDSQQNCVLVVDEDDFLEGILTYGDIRRCLPEKSNDTSKNGSRLVDDTCLVSSVCTRGMSYRGRERGLLTCYPNTSLAMAKELMEAKGIKQLPVVKHGVDHSRERKRRIVGLLHYNALWICLRKEINHRKLAYQNRT 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1224 745 PANTHER CHLORIDE CHANNEL PROTEIN CLC-F 28 743 - -
Lal3g1224 745 Gene3D - 568 727 IPR046342 -
Lal3g1224 745 PRINTS Chloride channel signature 198 217 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal3g1224 745 PRINTS Chloride channel signature 249 268 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal3g1224 745 PRINTS Chloride channel signature 426 446 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal3g1224 745 PRINTS Chloride channel signature 467 483 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal3g1224 745 PRINTS Chloride channel signature 485 504 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal3g1224 745 Pfam CBS domain 675 722 IPR000644 -
Lal3g1224 745 Pfam CBS domain 584 639 IPR000644 -
Lal3g1224 745 SUPERFAMILY CBS-domain pair 579 706 IPR046342 -
Lal3g1224 745 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 28 743 - -
Lal3g1224 745 SUPERFAMILY Clc chloride channel 95 519 IPR014743 -
Lal3g1224 745 SMART cbs_1 675 731 IPR000644 -
Lal3g1224 745 SMART cbs_1 591 639 IPR000644 -
Lal3g1224 745 MobiDBLite consensus disorder prediction 524 552 - -
Lal3g1224 745 CDD CBS_pair_voltage-gated_CLC_euk_bac 588 727 - -
Lal3g1224 745 CDD Voltage_gated_ClC 113 512 - -
Lal3g1224 745 ProSiteProfiles CBS domain profile. 588 645 IPR000644 -
Lal3g1224 745 ProSiteProfiles CBS domain profile. 672 739 IPR000644 -
Lal3g1224 745 Gene3D Clc chloride channel 89 533 - -
Lal3g1224 745 MobiDBLite consensus disorder prediction 1 26 - -
Lal3g1224 745 Pfam Voltage gated chloride channel 175 515 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal3g1224 745 MobiDBLite consensus disorder prediction 56 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1224 Lal-Chr3 17741954 17752540 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1224 - - gmx:100787625 1132.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1224 3 17741954 17752540 Lal3g1224 3 17741954 17752540 ECH