Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1204 ATGGAGCGATGTGAGTTGTGTGAGAAGAAGGCATTGGTGCACTGTGATTCGGACCAGGCTAAGCTATGTCGGGGCTGCGATGCCAAAGTTCACAATGCAAATTTCTTCTTAGCGAAGCACATGAGGGTTCTTCTATATCGTATATGCAATTCTCATACTAACTTCGTGTCTGTCGATCCACAATATATGATGAGGCACGACAGAGCATCAAAAGATGCTCTAATACCATGTTAA 234 0.4359 MERCELCEKKALVHCDSDQAKLCRGCDAKVHNANFFLAKHMRVLLYRICNSHTNFVSVDPQYMMRHDRASKDALIPC 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1204 77 Pfam B-box zinc finger 3 43 IPR000315 GO:0008270
Lal3g1204 77 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 55 - -
Lal3g1204 77 SMART bboxneu5 1 45 IPR000315 GO:0008270
Lal3g1204 77 PANTHER OS08G0178800 PROTEIN 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1204 Lal-Chr3 17491350 17493764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1204 2 55 C2C2-CO-like Transcription Factor Family AT5G54470 57.407 1.78e-15 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal3g1204 zf-B_box 5.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1204 - - lang:109351897 95.1301