Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1179 ATGGCCATTACCTTCTCAAATCTCCACACAGAATCAGGCCTCAAATCCCTTGACGATTTCCTATCCGGAAAAACCTACATTTCTGGGGATCAGTTTACAAAGGATGATATCAAAGTCTATGCATCTGTTTTGGAGAAACCAAGTGACACATCAGCAAATGCTGCTAATTGGTACAATGTTGTCTCTTCTCATCTTGCTCTAAGCTTCCCGGGGAATGCTCAAGGGGTAAGGTTCAGTGTCAAAGCTACTCCAGCTGAGGCTGCTCCTGCAAATCCGGATGCTTCTACTGCTGAAGATGATGATGATCTAGATCTCTTTGGTGATGAGACAGAGGAGGACAAGAAGGCGGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAGAAAGAGAGTGGCAAATCGTCTGTTCTGCTCGATGTTAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGACTGTTCGCAGCATCGAGTTGCCTGGCTTATTGTGGGGAGCATCTAAACTTGTCGCTGTTGGTTATGGGATCAAGAAGCTGCAAATTATGATGACCATTGTCGACGACCTTGTTTCCGTGGACACCCTTATCGAGGAGCGTCTGACAGTTGAGCCGAGCAACGAGTATATCCAGAGCTGCGATATTGTTGCATTCAACAAAATTTAA 672 0.4613 MAITFSNLHTESGLKSLDDFLSGKTYISGDQFTKDDIKVYASVLEKPSDTSANAANWYNVVSSHLALSFPGNAQGVRFSVKATPAEAAPANPDASTAEDDDDLDLFGDETEEDKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEETVRSIELPGLLWGASKLVAVGYGIKKLQIMMTIVDDLVSVDTLIEERLTVEPSNEYIQSCDIVAFNKI 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1179 223 CDD EF1B 132 223 IPR014038 GO:0003746|GO:0006414
Lal3g1179 223 SMART EF1_GNE_2 134 223 IPR014038 GO:0003746|GO:0006414
Lal3g1179 223 MobiDBLite consensus disorder prediction 84 131 - -
Lal3g1179 223 Gene3D - 127 223 IPR014717 -
Lal3g1179 223 PANTHER TRANSLATION ELONGATION FACTOR EF1B/RIBOSOMAL PROTEIN S6-RELATED 1 223 - -
Lal3g1179 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 212 223 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lal3g1179 223 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 223 - -
Lal3g1179 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 99 107 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lal3g1179 223 MobiDBLite consensus disorder prediction 109 131 - -
Lal3g1179 223 SUPERFAMILY eEF-1beta-like 131 223 IPR036219 -
Lal3g1179 223 Pfam EF-1 guanine nucleotide exchange domain 136 223 IPR014038 GO:0003746|GO:0006414
Lal3g1179 223 SUPERFAMILY GST C-terminal domain-like 9 65 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1179 Lal-Chr3 17089870 17093446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1179 1 223 Eukaryotic Initiation Factors Gene Family AT5G12110 69.737 1.09e-99 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1179 K03232 - gmx:100306132 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1179 3 17089870 17093446 Lal18g1479 18 16726822 16728951 PCT
Lal3g1179 3 17089870 17093446 Lal22g0147 22 921451 927850 PCT
Lal18g1479 18 16726822 16728951 Lal3g1179 3 17089870 17093446 PCT
Lal22g0147 22 921451 927850 Lal3g1179 3 17089870 17093446 PCT