Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1177 ATGAATAGAGATAAAGATGATCAAGAAGTTTCATATGATGATGATGGTGAACCCTATGAAGAGAAACTAGAGAAGATAGAGAAATCTTGTGATGATGATAATCATAATAATAAGGTTGTCGATGCTGTTACAGAAGCTCAGAAAAACTCATCTGGTGAAGTATCAATGCATGAGTGCAATATTTGTTTCAAGAATTTCAAGAACGGAAAAGCTTTGGGTGGCCATAGAAGATCACACTTTCAAGCTGCAAAGGTGAAAACCCATTTCTCAAATCTTTCAAAAACAACTAGAACCAATAGTAATAATAATAATAATAACAAGAAGGTTCTTTGTGATGATGATAATGATGGTGATAATGATGTGAAACACACTTGTTATCTTTGCAAGAAGGATTTCCCATCAAATCATTCATTATATGGCCACATGAGATCTCACCCTGAGAGAGATTGGAGGGGTATTTGTCCTCCAATTCATTCTGATCATAAGCATAAGCATAATAATGATAATAATAATAAGCATAGTTCTTCTTCTAGTTCACTGAGTTATGATTTAGAAGATGGTCATAGTTATGATTATGATGAAGTTGCAATTGATATATCAAAGTCTTGTTCTTTACCAAGATGGAAACAAACTGGTAAGAGAGGAAGAAAGAGTACTAGTGTTTATGAAGCTGCTGAAAATCTTGTTCTTATGTCATTGAGTTATAGTAAATCTTTTGCTACTGATGAATCTATGGTTTTTGAGCCAAATAGTAGTCTTCAATCTCTATTAATCTCATGCAAGAGAAATAACATTGATGAATTAGCATCAACTAGTGAAAACCATGCATCAAAGAAGATTAAATTTGACCAAAATGATGGATTTGATAGTTATAAGTTGAATATGAGAGAAGGTTGTTGTTTATCTGAATTAAAGGTAGAGAAGGATTCTGGAAGCATTAGCATTAAAGAACCAATGCAAGATCATAGTTTTGATGTAAGGAATAAGATGATGAAGAAGTTGAATAAACTGTTATTGAAGAAACCAAAGGGTCAAGAATCTGAAGAATCTGAAGAAAAAAGCTTTGTTAGCAATGAAACTAGTCAAAAGAAAGTGAATGGTTACCAATGTGATATTTGTTGGAAATCTTTTCCTACTTTCCAAGGTTTAGGGGGACATAGATCAATTCATAACAGAAAGAAGAATAATGTTATGAACATAGCTGAATCAAAGTCTTCAGATACTATTGCTGATGATGCAACCCTAGTGATGGAGGAAGCCATTGATGAGTTACAAACTGAAGATGCATCTTCAAGTCAATTTAGAGTTCCAAAAGTTTTGGACTTTGATCTGAATATGCTACCTGATGATATGAATGATTGA 1362 0.3289 MNRDKDDQEVSYDDDGEPYEEKLEKIEKSCDDDNHNNKVVDAVTEAQKNSSGEVSMHECNICFKNFKNGKALGGHRRSHFQAAKVKTHFSNLSKTTRTNSNNNNNNKKVLCDDDNDGDNDVKHTCYLCKKDFPSNHSLYGHMRSHPERDWRGICPPIHSDHKHKHNNDNNNKHSSSSSSLSYDLEDGHSYDYDEVAIDISKSCSLPRWKQTGKRGRKSTSVYEAAENLVLMSLSYSKSFATDESMVFEPNSSLQSLLISCKRNNIDELASTSENHASKKIKFDQNDGFDSYKLNMREGCCLSELKVEKDSGSISIKEPMQDHSFDVRNKMMKKLNKLLLKKPKGQESEESEEKSFVSNETSQKKVNGYQCDICWKSFPTFQGLGGHRSIHNRKKNNVMNIAESKSSDTIADDATLVMEEAIDELQTEDASSSQFRVPKVLDFDLNMLPDDMND 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1177 453 ProSitePatterns Zinc finger C2H2 type domain signature. 370 390 IPR013087 -
Lal3g1177 453 MobiDBLite consensus disorder prediction 340 360 - -
Lal3g1177 453 MobiDBLite consensus disorder prediction 152 180 - -
Lal3g1177 453 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Lal3g1177 453 MobiDBLite consensus disorder prediction 340 358 - -
Lal3g1177 453 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Lal3g1177 453 MobiDBLite consensus disorder prediction 93 108 - -
Lal3g1177 453 Gene3D Classic Zinc Finger 343 432 - -
Lal3g1177 453 SMART c2h2final6 123 145 IPR013087 -
Lal3g1177 453 SMART c2h2final6 368 390 IPR013087 -
Lal3g1177 453 SMART c2h2final6 57 79 IPR013087 -
Lal3g1177 453 Gene3D Classic Zinc Finger 54 145 - -
Lal3g1177 453 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 145 IPR013087 -
Lal3g1177 453 Pfam C2H2-type zinc finger 123 147 - -
Lal3g1177 453 Pfam C2H2-type zinc finger 368 390 - -
Lal3g1177 453 Pfam C2H2-type zinc finger 57 79 - -
Lal3g1177 453 MobiDBLite consensus disorder prediction 93 113 - -
Lal3g1177 453 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
Lal3g1177 453 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 5 215 IPR044653 GO:0003700
Lal3g1177 453 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 326 411 IPR044653 GO:0003700
Lal3g1177 453 SUPERFAMILY beta-beta-alpha zinc fingers 123 390 IPR036236 -
Lal3g1177 453 PANTHER ZINC FINGER PROTEIN ZAT4-LIKE 5 215 - -
Lal3g1177 453 PANTHER ZINC FINGER PROTEIN ZAT4-LIKE 326 411 - -
Lal3g1177 453 ProSiteProfiles Zinc finger C2H2 type domain profile. 368 395 IPR013087 -
Lal3g1177 453 MobiDBLite consensus disorder prediction 152 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1177 Lal-Chr3 17067117 17068478 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1177 57 160 C2H2 Transcription Factor Family AT2G26940 36.842 2.07e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal3g1177 zf-C2H2_6 8.1e-07 CL0361