Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1174 ATGGATTTGTTTGAGCCAGATGGAAATGGCAACGGCAACGACATCGGCATCGAGGAGTCTTTGCCACCACCGCCTCCAATTGTCCCACCAGATGTGGTACCTGTCAAAGCAGAAGATGTCCTTCCTGTTCCTGCTGAACCTGTTAAGAAAAAGGCTTCCCGATTTCCGATAGCCCGACGTGGTCTGGGATCGAAAGGAATGAAGATATCTCTTCAAACCAATCATTTCAAAGTTAATGTCAATACCAATGATGGATATTTCTTCCATTATAGTGTGGCTTTTTCTTATGAGGATGGACGCCCTGTTGAAGGTAAGGGCGTAGGGCGAAAGATAATGGATCGGGTTCAGGAGACATATGATTCAGAGTTAAATGGTAAGGACTTCGCATATGATGGGGAGAAAAGCCTGTTTACCATCGGATCTCTACCGCGAAACAAACTCGAGTTTGAAGTTGTTCTGGAGGATGTCACATCCAACAGGAATAATAATGGCAATGTTAGCCCTGATAACGGGCATGGGGACAATGAGATTGACAAAAAGAGAATGCGGCGCCCCTATCGTGCAAAGACGTTCAAGGTGGAGATTAGCTATGCTGCGAAAATCCCAATGCAGGCCATTGCCAATGCCTTACGAGGGCAGGAGACAGAGAACTTCCAAGAAGCAATTAGAGTGCTTGATATTGTATTGAGGCAACATGCGGCAAAGCAGGGTTGCCTACTTGTCCGTCAATCATTCTTCCACAATGATCCGAATAATTTTGCTGATGTTGGAGGTGGCGTTCTAGGCTGCCGGGGATTCCATTCAAGCTTTAGAACTACACAGAGTGGGCTGTCTCTTAACATAGATGTTTCCACTACCATGATAATTCAACCGGGACCTGTTGTTGACTTCCTAATTGCCAATCAAAATGTCAGAGATCCATTCCAAATTGACTGGGCAAAGGCCAAAAGGACACTGAAAAATCTGAGGATTAAAGTTAGCCCATCCAATCAAGAGTACAAAATCAACGGGCTCAGCGAACTTCCATGCAGAGAGCAGACTTTTACTCTGAAGAACAGGAATGGAAGAGATGGTGAAGAGAGTACTGAGGAAGTGACTGTTTATGATTATTTTGTTAATAATCGCAACATAAATCTCCGTTACTCTGCTGAGCTTCCATGTCTCAATGTTGGCAAGCCTAAACGGCCGACATATCTCCCGATTGAGCTTTGTGAATTGGTGTCTTTGCAACGATATACAAAAGCTCTGTCCACACTTCAACGGGCTTCACTGGTGGAGAAGTCAAGGCAGAAGCCACATGAGAGGATGAAGATTTTGTCTGCTGCACTTAAAACCAGCAACTATGGTTCTGAACCTTTGCTTCGTAATTGTGGAGTTTCTATAAGCACTGGCTTTACTGAAGTGGAGGGTCGTGTTTTACCTGCTCCAAGGTTGAAATTCGGCAATGGCGAGGACCTGAATCCAAGGAATGGGAGATGGAATGTTAGTAACAAGAAATTTGTGCAACCGACAAAGATAGAACGATGGGCTGTGGCTAACTTTTCTGCACGGTGTGATATACGAGGGCTTGTGAGGGATCTGATCAGGATCGGAGAAATGAAAGGAATCGCGATAGATGCCCCATTTGATGTGTTTGAAGAGAATCCTCAGTTTCGCCGTGCCCCACCTATGGTTAGAGTGGAGAAAATGTTCGAGAGCATCCAGTCGAAACTTCCTGGGGCTCCCCAGTTCCTTCTCTGTCTGCTTCCTGATCGGAAAAACTGTGAAATTTATGGTCCATGGAAAAAGAAGACTCTTGCTGAGTATGGAATCGTTAATCAGTGCATGGCTCCTACTAGGGTGAATGATCAATTTCTGACTAATGTTATGTTGAAGATCAATGCCAAGCTTGGCGGGTTGAATTCATTGTTATGTGTTGAACACTCTCCTTCCCTTCCCATTGTTTCCAAAGCACCCACCCTCATTCTCGGCATGGACGTATCACACGGTTCACCAGGACAGTCTGATATTCCGTCAATTGCAGCGGTGGTCAGCTCTAGACAGTGGCCTCTGATCTCTAAGTATCGAGCATGTGTACGTACCCAGTCTGCAAAGGCGGAAATGATAGATAACTTGTTCAAGAAAGTATCTGAAAAGGAGGATGAAGGCATCATGAGGGAACTCTTGCTTGATTTCTATGTAACTTCTGGGAAGAGAAAACCAGATAACATAATCATATTCAGGGATGGTGTCAGCGAATCACAGTTCAATCAAGTTTTGAATATCGAACTTGATCAAATCATCGAGGCATGTAAATTTCTTGATGATAAGTGGAACCCGAAGTTTTTGGTAATTGTTGCTCAGAAGAATCACCACACAAGATTCTTCCAGCCGGGCTCTCCTGAAAATGGTACCAGTAGGCCTACACATTACCATGTTTTGCTTGATGAGATTGGTTTCTCCCCTGATGAGCTACAAGAACTTGTCCATTCTCTATCATATGTGTATCAGAGGAGTACTACTGCCATATCTGTTGTTGCTCCGATATGCTATGCGCACTTAGCTGCTACTCAGTTGGGGCAGTTTATGAAATTTGAAGACAAATCTGAGACATCTTCAAGCCATGGTGGACTGACTGCCGCCGGAGCTGTCCCCGTACCTCAGTTGCCCAAATTGCAGGACAATGTCGCCAACTCGATGTTCTTTTGTTGA 2691 0.4474 MDLFEPDGNGNGNDIGIEESLPPPPPIVPPDVVPVKAEDVLPVPAEPVKKKASRFPIARRGLGSKGMKISLQTNHFKVNVNTNDGYFFHYSVAFSYEDGRPVEGKGVGRKIMDRVQETYDSELNGKDFAYDGEKSLFTIGSLPRNKLEFEVVLEDVTSNRNNNGNVSPDNGHGDNEIDKKRMRRPYRAKTFKVEISYAAKIPMQAIANALRGQETENFQEAIRVLDIVLRQHAAKQGCLLVRQSFFHNDPNNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFQIDWAKAKRTLKNLRIKVSPSNQEYKINGLSELPCREQTFTLKNRNGRDGEESTEEVTVYDYFVNNRNINLRYSAELPCLNVGKPKRPTYLPIELCELVSLQRYTKALSTLQRASLVEKSRQKPHERMKILSAALKTSNYGSEPLLRNCGVSISTGFTEVEGRVLPAPRLKFGNGEDLNPRNGRWNVSNKKFVQPTKIERWAVANFSARCDIRGLVRDLIRIGEMKGIAIDAPFDVFEENPQFRRAPPMVRVEKMFESIQSKLPGAPQFLLCLLPDRKNCEIYGPWKKKTLAEYGIVNQCMAPTRVNDQFLTNVMLKINAKLGGLNSLLCVEHSPSLPIVSKAPTLILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQSAKAEMIDNLFKKVSEKEDEGIMRELLLDFYVTSGKRKPDNIIIFRDGVSESQFNQVLNIELDQIIEACKFLDDKWNPKFLVIVAQKNHHTRFFQPGSPENGTSRPTHYHVLLDEIGFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGLTAAGAVPVPQLPKLQDNVANSMFFC 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1174 896 Pfam Argonaute linker 2 domain 434 480 IPR032472 -
Lal3g1174 896 Gene3D - 472 638 - -
Lal3g1174 896 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 796 895 - -
Lal3g1174 896 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 4 796 - -
Lal3g1174 896 Gene3D paz domain 285 412 - -
Lal3g1174 896 Pfam PAZ domain 295 424 IPR003100 GO:0005515
Lal3g1174 896 Gene3D - 645 793 IPR036397 GO:0003676
Lal3g1174 896 SMART Piwi_a_2 577 857 IPR003165 GO:0003676
Lal3g1174 896 SUPERFAMILY PAZ domain 286 448 IPR036085 GO:0005515
Lal3g1174 896 CDD PAZ_argonaute_like 291 407 - -
Lal3g1174 896 Gene3D - 794 896 IPR036397 GO:0003676
Lal3g1174 896 ProSiteProfiles PAZ domain profile. 333 408 IPR003100 GO:0005515
Lal3g1174 896 Pfam Mid domain of argonaute 487 539 IPR032473 -
Lal3g1174 896 SUPERFAMILY Ribonuclease H-like 561 855 IPR012337 -
Lal3g1174 896 ProSiteProfiles Piwi domain profile. 577 857 IPR003165 GO:0003676
Lal3g1174 896 Pfam Piwi domain 578 795 IPR003165 GO:0003676
Lal3g1174 896 Pfam Piwi domain 796 857 IPR003165 GO:0003676
Lal3g1174 896 Pfam Argonaute linker 1 domain 241 289 IPR014811 -
Lal3g1174 896 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 4 796 - -
Lal3g1174 896 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 796 895 - -
Lal3g1174 896 CDD Piwi_ago-like 452 851 IPR045246 -
Lal3g1174 896 SMART DUF1785_2 239 291 IPR014811 -
Lal3g1174 896 Pfam N-terminal domain of argonaute 68 229 IPR032474 -
Lal3g1174 896 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1174 Lal-Chr3 17022635 17030878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1174 37 896 Eukaryotic Initiation Factors Gene Family AT1G48410 33.546 2.94e-149 466