Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0953 ATGGGCAACTGTTGCTCCGGCAACACCACCGATGCCCCGGAGGTTGTCGATAACACTGCCACCGCCCACAAGGGAGAAACAAACCAAGAAAGCAGCAAAAATGAAAACACCAATGACCCGTCCACAAACACAGCAACTATCCCACCACCAACATCAAAGCCGCCACCCTCAGCCTCACCTCCTCCATCAAAACAGTCAAAACCCGCCGCCATTGGCCCAGTACTGGGCCGACCAATGGAGGACGTGAGAGCCACATATACCATGGGGAAGGAGTTAGGGAGAGGACAATTTGGTGTAACTCATTTGTGCATACACAAGGTCACGGGTCAGCATTTTGCATGCAAAACCATAGCCAAGAGGAAACTTGTGAACAAGGAGGACATAGAGGATGTGAGGAGAGAGGTGCAAATAATGCACCATCTCACGGGTCAACCAAACATTGTTGAGCTTAAAGGTGCCTATGAGGACAAGCAATCGGTTAATTTGGTGATGGAGTTGTGTGCCGGTGGTGAGCTCTTTGACCGTATTATCGCCAAGGGACATTACACCGAACGTGCTGCAGCTTCCTTATTAAGAAACATAGTTCAGATTGTTCACACTTTCCATTCAATGGGTGTCATTCATAGAGATCTCAAGCCTGAAAATTTCTTATTGTTAAGCAAGGACGAGAATGCACCCCTCAAGGCCACAGATTTCGGTCTATCTGTTTTTTACAAGCAAGGAGAGATGTTCAAAGACATTGTTGGTAGCGCATATTACATTGCACCTGAGGTCTTGAAGAGGAGATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTAATGCTATATATTCTTCTATGTGGTGTTCCTCCATTTTGGGCAGGTGTAGATTCCATCCTCACATTTACAAAAGGTCACATTGACTTTACAAGCGATCCATGGCCTTCAATTTCACCACCGGCAAAGGATCTTGTACGTAAAATGTTGAATTCAGATCCCAAACAAAGACTTACCGCGTTCGAAGTTCTTAACCATCCTTGGATCAAGGAGGACGGAGAAGCCCCCGATAAACCTCTTGACAATGCGGTGCTGAATAGGCTCAAACAGTTTAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTGGATGTTTATCAGAAGAAGAAATCATGGGGTTGAAAGAAATGTTCAAGGGGATGGACACTGACAACAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGGCTGGCGACACAAGGGACAAAGTTGTCAGAACAAGAAGTTAAGCAATTAATGGAAGCTGCTGATGCTGATGGCAATGGAACCATAGATTACGATGAGTTCATCACTGCAACAATGCACATGAACCGAATGAACAGAGAAGAACATCTTTACACTGCATTCCAATACTTTGATAAAGATAACAGCGGGTTCATTACCACTGAAGAACTAGAGCAAGCTTTACATGATTATAACATGCATGACGGCAGGGACATAAAGGAGATCCTTCAAGAAGTTGATGGAGATAATGATGGGCGCATTAACTACGATGAGTTTGTGGCAATGATGGGAAAAGGAAATCCTGAAGCTCATACTAAGAAGAGGCGTGATTCATTTGCTTCGTATTAG 1623 0.4467 MGNCCSGNTTDAPEVVDNTATAHKGETNQESSKNENTNDPSTNTATIPPPTSKPPPSASPPPSKQSKPAAIGPVLGRPMEDVRATYTMGKELGRGQFGVTHLCIHKVTGQHFACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQPNIVELKGAYEDKQSVNLVMELCAGGELFDRIIAKGHYTERAAASLLRNIVQIVHTFHSMGVIHRDLKPENFLLLSKDENAPLKATDFGLSVFYKQGEMFKDIVGSAYYIAPEVLKRRYGPEVDIWSVGVMLYILLCGVPPFWAGVDSILTFTKGHIDFTSDPWPSISPPAKDLVRKMLNSDPKQRLTAFEVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITIEELKQGLATQGTKLSEQEVKQLMEAADADGNGTIDYDEFITATMHMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALHDYNMHDGRDIKEILQEVDGDNDGRINYDEFVAMMGKGNPEAHTKKRRDSFASY 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0953 540 CDD STKc_CAMK 86 341 - -
Lal3g0953 540 ProSitePatterns Protein kinases ATP-binding region signature. 92 119 IPR017441 GO:0005524
Lal3g0953 540 MobiDBLite consensus disorder prediction 47 67 - -
Lal3g0953 540 Gene3D Phosphorylase Kinase; domain 1 88 171 - -
Lal3g0953 540 ProSiteProfiles EF-hand calcium-binding domain profile. 457 492 IPR002048 GO:0005509
Lal3g0953 540 MobiDBLite consensus disorder prediction 1 77 - -
Lal3g0953 540 ProSitePatterns EF-hand calcium-binding domain. 398 410 IPR018247 -
Lal3g0953 540 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 35 530 - -
Lal3g0953 540 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
Lal3g0953 540 Gene3D Transferase(Phosphotransferase) domain 1 172 349 - -
Lal3g0953 540 SUPERFAMILY Protein kinase-like (PK-like) 85 346 IPR011009 -
Lal3g0953 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Lal3g0953 540 ProSiteProfiles EF-hand calcium-binding domain profile. 496 527 IPR002048 GO:0005509
Lal3g0953 540 ProSitePatterns EF-hand calcium-binding domain. 505 517 IPR018247 -
Lal3g0953 540 SMART efh_1 425 453 IPR002048 GO:0005509
Lal3g0953 540 SMART efh_1 461 489 IPR002048 GO:0005509
Lal3g0953 540 SMART efh_1 496 524 IPR002048 GO:0005509
Lal3g0953 540 SMART efh_1 389 417 IPR002048 GO:0005509
Lal3g0953 540 Pfam Protein kinase domain 86 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0953 540 SMART serkin_6 86 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0953 540 MobiDBLite consensus disorder prediction 1 46 - -
Lal3g0953 540 Pfam EF-hand domain pair 459 521 IPR002048 GO:0005509
Lal3g0953 540 Pfam EF-hand domain pair 390 450 IPR002048 GO:0005509
Lal3g0953 540 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 530 - -
Lal3g0953 540 SUPERFAMILY EF-hand 382 521 IPR011992 -
Lal3g0953 540 ProSiteProfiles Protein kinase domain profile. 86 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0953 540 ProSitePatterns EF-hand calcium-binding domain. 470 482 IPR018247 -
Lal3g0953 540 Gene3D - 350 526 - -
Lal3g0953 540 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Lal3g0953 540 ProSiteProfiles EF-hand calcium-binding domain profile. 385 420 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0953 Lal-Chr3 10223387 10235075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0953 1 535 EF-hand Containing Proteins AT5G12180 77.365 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal3g0953 Pkinase 4.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0953 K13412 - gmx:100781355 902.123