Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0952 ATTAGTAATGCCAACTACATAAAAATGGGCTTTGGCAGTAGTGGAAGAAAAAGGAAAACAAATGCCAGGAACTCAATTTCTTATAAAGTGGGTGATGTTGAATGGACCAATAAGATTCCAGAGTGTCCAGTATATTACCCATCACAGAAGGAGTTTCAGGATCCTTTCGCTTATCTACATAAGATTCTTCCAGAAGCATCAAGTTTTGGGATATGCAAAATTGTTTCTCCTATAATTGCATCTATTCCTGCTGCTGTTGTCTTAACCAAAGAGAAGAAGGATTTCAAGTTTGAAACTAATGTACAACCCCTTCGGCTTTCTGAATGGAATGAGAAAGATAAGATCACCTTTATGAAAGGAAGAAAATACACATATCAGGAATTTGAGGCTCTAGCAAACAAGGCCTTTCTTAGTCGATTTTACAGTTCTAGGAGTCTCTCTTCTTCATATATTGAAAAGGAGTTCTGGCACGAAATGGCACATGGCCATAAAGGTACAGTTGAGTATGGAGTCAATGTTGAAGGTAGTGCCTTTTCATGTGATCCCAAAGACAAGCTTGGAAGAAGCAAATGGAATTTGAAGAATTTCTCACGGCTGCCACAATCCACATTGCGCTTAGTTGACAAGGGAATTCCGGGAATTACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCACTACTTATATAGCATAAATTATCATCATTCAGGTGCAAATAAAATTTGGTATGGCATACCTGCCCATGAAGCCTCTCAATTTGAAGATATTGTCCTACATAATGTGTATTGCAAAAATATCTTATCAAAACATAGAGAGGATAAAGCTTTCCAACTACTAGCATATAAAACAACCATGTTCCCTCCATATATCTTCCTACAACATGATGTGCCAGTTTACAAGGCTGTTCAGAATCCAGGAGAGTTTGTCATTACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAATTGTGGAGAAGCTGTAAACTTTGCTATTGGTGATTGGTTTCCACTAGGGGCTGAAGCTAGTAAGCGTTACGCGAATCTCAGAATGTTTCCTATTATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGCGACTTTACAAATTGTCGAAAGACAGAGGTTCTAAGAAGTTGGCATCTAATCATGCTACAGTCCTGTCTTTTGTGCATCTTATACAATTTTATAAGAAGACTCTCTTGCAACTGAAAGGCTCAAAAGAGTGTTCAATTTCTTCAAGTACAATAGGGACCCTGATATGCTGCAACTGCCGTAGAGATTGTTATGTAGACATTGCATCAAAGAAGTGCACATGTGGTAGAGAATATACCGTTTTTAAGCGGGAAGACATGTTGGCAATGGAAGATGCTGCTACTAAGTTTGAAGAGGAAGGGGGGATGTTGCAGTTGTCGGGGTTTGAGCCTAGGTGCGCTTACACTTTATGTCTCGCAACTTTATCAACTGAGTTGGCTGTTAGGGACCATTTGTATCATTTTATTGTTTGA 1542 0.3878 ISNANYIKMGFGSSGRKRKTNARNSISYKVGDVEWTNKIPECPVYYPSQKEFQDPFAYLHKILPEASSFGICKIVSPIIASIPAAVVLTKEKKDFKFETNVQPLRLSEWNEKDKITFMKGRKYTYQEFEALANKAFLSRFYSSRSLSSSYIEKEFWHEMAHGHKGTVEYGVNVEGSAFSCDPKDKLGRSKWNLKNFSRLPQSTLRLVDKGIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKIWYGIPAHEASQFEDIVLHNVYCKNILSKHREDKAFQLLAYKTTMFPPYIFLQHDVPVYKAVQNPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAEASKRYANLRMFPIIPYEELLCKEAMRLYKLSKDRGSKKLASNHATVLSFVHLIQFYKKTLLQLKGSKECSISSSTIGTLICCNCRRDCYVDIASKKCTCGREYTVFKREDMLAMEDAATKFEEEGGMLQLSGFEPRCAYTLCLATLSTELAVRDHLYHFIV 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0952 513 ProSiteProfiles JmjN domain profile. 42 83 IPR003349 -
Lal3g0952 513 PANTHER LYSINE-SPECIFIC DEMETHYLASE 20 477 - -
Lal3g0952 513 SUPERFAMILY Clavaminate synthase-like 182 384 - -
Lal3g0952 513 Pfam JmjC domain, hydroxylase 218 341 IPR003347 -
Lal3g0952 513 SMART cupin_9 188 358 IPR003347 -
Lal3g0952 513 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 20 477 - -
Lal3g0952 513 ProSiteProfiles JmjC domain profile. 188 358 IPR003347 -
Lal3g0952 513 Gene3D Cupin 42 402 - -
Lal3g0952 513 SMART JmjN_1 41 77 IPR003349 -
Lal3g0952 513 Pfam jmjN domain 43 75 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0952 Lal-Chr3 10184742 10187275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0952 39 381 JUMONJI Transcription Factor Family AT2G34880 34.739 7.25e-60 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal3g0952 JmjC 8.7e-40 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0952 - - ahf:112732604 677.167