Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0906 ATGGGTAACTGTTTTGGTAAATGTAAAGATTCAGAAACAGAAGACATTGGTCAAAGACATGTTGGGTCTGGTGCTGGTGTGCACAATCAAAAGACTCATGAAACCTTTGCAATCCAATCAAGACCACAACCTTATCAGTTACCTCAAAAGCCTTATGTTCATGTTCCAAGTCCAAAACCAAATAAAAAACCAGACACAATCCTAGGAAAGCCATTTGAGGATGTGAAACAATTCTACACACTTGGTAAAGAATTGGGTAGAGGGAAATTTGGTGTGACACATCTTTGCACTGAGAATTCAACTGGTTTGTTATATGCTTGCAAGTCAATCTCAAAGAGGAAGCTTGTTAGTAAATCTGATAAGGAAGATATAAAGAGGGAGATTCAGATTATGCAGCATTTGAGTGGTCAACCTAACATTGTTGAGTTCAAAGGTGCTTATGAGGATATGAATTTTGTTCGGGTTGTTATGGAATTGTGTGCTGGTGGTGAACTATTTGATAGGATTATTGCTAAGGGACATTACAGTGAAAAAGCTGCTGCTTCTATATGTAGACAGATTGTTAATGTTGTTCATATATGCCATTTCATGGGTGTGATGCATAGGGATCTCAAGCCAGAGAATTTCTTGATGTCTAGTAAGGATGAAAATGCTCTTATCAAGGCAACAGATTTTGGCTTGTCAGTTTTCATTGAAGAAGGAAAGCTGTATCGCGATATAGTTGGAAGTGCTTATTATGTTGCTCCAGAAGTACTAAGGCGCAGATGTGGGAAGGAAATAGATATATGGAGTGCAGGAGTTATATTGTATATCTTACTTAGCGGTGTCCCTCCGTTTTGGGCTGAGACCGAAAAGGGAATATTTGATGCCATATTGGAAGGAGTTATTGATTTTGAAAGTCAACCATGGCCTAATATATCAGACAGTGCTAAGGACCTTGTTCGTAAGATGCTTATACAAGATCCAAAGAAACGCATTACTTCTACTCAAGTTCTTGAGCACCCATGGATTAAAGATGGAAATGCTTCTGACAAGCCAATAGACAGTGCAGTCCTTTCGAGAATGAAGCAATTCAGAGCTATGAATAAACTAAAGAAACTTGCGCTGAAGGTCATTGCTGAGAATATGTCTACTGAAGACATCCAAGGCTTAAAGGCAATGTTTACAAATATGGACACTGACAAGAGTGGTTCCATCACCTATGAAGAACTGAAGGCGGGATTGCAAAGACTTGGTTCAAAGCTTACGGAGGCCGAAGTGAAGCAACTTATGGAAGCTGCGGATGTAGATGGAAATGGCACGATTGACTACATAGAATTCATCACTGCTACAATGCATAGACACAAATTAGAAAAAGACGACAATCTTTACAAAGCTTTCCAATATTTTGATAAAGACAACAGTGGGTATATTACAGGAGATGAACTGCAAACTGCGATGAAAGAATATGGTATGGGCGATGATGCCACAATCAGCGAAATTATATCCGAAGTCGATTCAATCATTTCTGAAGTCGATACAGATAATGATGGAAGAATCAACTTTGAAGAGTTCTGTGTAATGATGAGAAGTGGAAACCAACAACATGCCAAGCTATTCTAA 1602 0.3883 MGNCFGKCKDSETEDIGQRHVGSGAGVHNQKTHETFAIQSRPQPYQLPQKPYVHVPSPKPNKKPDTILGKPFEDVKQFYTLGKELGRGKFGVTHLCTENSTGLLYACKSISKRKLVSKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDMNFVRVVMELCAGGELFDRIIAKGHYSEKAAASICRQIVNVVHICHFMGVMHRDLKPENFLMSSKDENALIKATDFGLSVFIEEGKLYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILEGVIDFESQPWPNISDSAKDLVRKMLIQDPKKRITSTQVLEHPWIKDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENMSTEDIQGLKAMFTNMDTDKSGSITYEELKAGLQRLGSKLTEAEVKQLMEAADVDGNGTIDYIEFITATMHRHKLEKDDNLYKAFQYFDKDNSGYITGDELQTAMKEYGMGDDATISEIISEVDSIISEVDTDNDGRINFEEFCVMMRSGNQQHAKLF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0906 533 MobiDBLite consensus disorder prediction 1 67 - -
Lal3g0906 533 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Lal3g0906 533 ProSitePatterns EF-hand calcium-binding domain. 506 518 IPR018247 -
Lal3g0906 533 SMART efh_1 419 447 IPR002048 GO:0005509
Lal3g0906 533 SMART efh_1 497 525 IPR002048 GO:0005509
Lal3g0906 533 SMART efh_1 455 483 IPR002048 GO:0005509
Lal3g0906 533 SMART efh_1 383 411 IPR002048 GO:0005509
Lal3g0906 533 ProSitePatterns EF-hand calcium-binding domain. 464 476 IPR018247 -
Lal3g0906 533 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Lal3g0906 533 Gene3D - 377 445 - -
Lal3g0906 533 SUPERFAMILY EF-hand 376 523 IPR011992 -
Lal3g0906 533 CDD EFh 458 523 IPR002048 GO:0005509
Lal3g0906 533 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Lal3g0906 533 Gene3D Phosphorylase Kinase; domain 1 81 164 - -
Lal3g0906 533 MobiDBLite consensus disorder prediction 28 46 - -
Lal3g0906 533 ProSiteProfiles Protein kinase domain profile. 79 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0906 533 ProSiteProfiles EF-hand calcium-binding domain profile. 493 528 IPR002048 GO:0005509
Lal3g0906 533 ProSitePatterns EF-hand calcium-binding domain. 428 440 IPR018247 -
Lal3g0906 533 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 35 527 - -
Lal3g0906 533 ProSiteProfiles EF-hand calcium-binding domain profile. 451 486 IPR002048 GO:0005509
Lal3g0906 533 Coils Coil 401 421 - -
Lal3g0906 533 CDD STKc_CAMK 78 336 - -
Lal3g0906 533 SUPERFAMILY Protein kinase-like (PK-like) 78 357 IPR011009 -
Lal3g0906 533 Pfam EF-hand domain pair 384 444 IPR002048 GO:0005509
Lal3g0906 533 Pfam EF-hand domain pair 454 523 IPR002048 GO:0005509
Lal3g0906 533 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 527 - -
Lal3g0906 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Lal3g0906 533 Gene3D - 357 522 - -
Lal3g0906 533 Gene3D Transferase(Phosphotransferase) domain 1 165 356 - -
Lal3g0906 533 Pfam Protein kinase domain 79 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0906 533 SMART serkin_6 79 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0906 533 ProSiteProfiles EF-hand calcium-binding domain profile. 415 450 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0906 Lal-Chr3 9162713 9168500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0906 1 533 EF-hand Containing Proteins AT3G20410 73.321 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal3g0906 Pkinase 4.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0906 K13412 - gmx:100798651 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0076 6 445985 456316 Lal3g0906 3 9162713 9168500 ECH
Lal3g0906 3 9162713 9168500 Lal3g0906 3 9162713 9168500 ECH