Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0904 ATGCCCTCAGCTCAAGATCCATTCTACGTTGTCAAGGCTGAGATTCAAGAATCTATTGATAAGTTGCAACCGACTTTTCGCCAATGGGAAAACACTCCGGATGCTGGGGATCGGGTTCATTTGTCGAAGGAGGTTCTTGCTGGATGCGAAAGCGTAGAGTGGCAGTGGTCTTCTCTTCTGCAACATTACCAATATACAAGTGCTGAAATTTGTTTTCTTGGTAGAAAGCTGGATGAATTGGACAAAGCAATTGCTGTAGCATCTAAAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGCTTGAAAGCCGGAGGAGGTGGACAAGTAGTGCACGGACTCAGGTAGGCAATGTGAAGAAAGCTGTGGAAGCTGGAAAGGGCTCAAGCACAGCAAGCCATGCTAGTGTAAATGCAATGCACCAAGAACTAATGAGGCTACCTAATTCACGTCAAACTGATACATACAATCAATATGCTGCCCAAGATAATGATGATTTCATACAATCCGAATCAGATAGACAGATGCTTCTTATAAAGAGACAGGATGAGGAGTTGGATGAGCTTAGTTTAAGTGTGCAAAGAATTGGAGGTGTTGGACTTACAATACATGAAGAACTCATTGGGCAGGAAAGAATTATAGATGATCTGGGATCTGAGATGGACGGTACATCAAATCGTCTAGATTTTGTCCAAAAAAAAGTAGCAATGGTTATGAAAAAAGCTAGTGCTAAGGGCCAGATCATGATGATATTGGGTTTGTTCGCCCTAAAGCTGGATGAATTGGACAAAGCAATTGCTGTAGCATCTAAAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGCTTGAAAGCCGGAGGAGGTGGACAAGTAGTGCACGGACTCAGGTAGGCAATGTGAAGAAAGCTGTGGAAGCTGGAAAGGGCTCAAGCACAGCAAGCCATGCTAGTGTAAATGCAATGCACCAAGAACTAATGAGGCTACCTAATTCACGTCAAACTGATACATACAATCAATATGCTGCCCAAGATAATGATGATTTCATACAATCCGAATCAGATAGACAGATGCTTCTTATAAAGAGACAGGATGAGGAGTTGGATGAGCTTAGTTTAAGTGTGCAAAGAATTGGAGGTGTTGGACTTACAATACATGAAGAACTCATTGGGCAGGAAAGAATTATAGATGATCTGGGATCTGAGATGGACGGTACATCAAATCGTCTAGATTTTGTCCAAAAAAAAGTAGCAATGGTTATGAAAAAAGCTAGTGCTAAGGGCCAGATCATGATGATATTGGGTTTGTTCGCCCTGTTCATTTTCCTTTTTATCTTGGTGTTCTTCACCTAG 1347 0.4202 MPSAQDPFYVVKAEIQESIDKLQPTFRQWENTPDAGDRVHLSKEVLAGCESVEWQWSSLLQHYQYTSAEICFLGRKLDELDKAIAVASKDPSWYGIDEVELESRRRWTSSARTQVGNVKKAVEAGKGSSTASHASVNAMHQELMRLPNSRQTDTYNQYAAQDNDDFIQSESDRQMLLIKRQDEELDELSLSVQRIGGVGLTIHEELIGQERIIDDLGSEMDGTSNRLDFVQKKVAMVMKKASAKGQIMMILGLFALKLDELDKAIAVASKDPSWYGIDEVELESRRRWTSSARTQVGNVKKAVEAGKGSSTASHASVNAMHQELMRLPNSRQTDTYNQYAAQDNDDFIQSESDRQMLLIKRQDEELDELSLSVQRIGGVGLTIHEELIGQERIIDDLGSEMDGTSNRLDFVQKKVAMVMKKASAKGQIMMILGLFALFIFLFILVFFT 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0904 448 Pfam Syntaxin 6, N-terminal 254 300 IPR015260 GO:0016020|GO:0048193
Lal3g0904 448 Pfam Syntaxin 6, N-terminal 6 119 IPR015260 GO:0016020|GO:0048193
Lal3g0904 448 SUPERFAMILY t-snare proteins 246 303 IPR010989 GO:0016020|GO:0016192
Lal3g0904 448 Gene3D - 2 67 - -
Lal3g0904 448 Gene3D - 68 125 - -
Lal3g0904 448 SMART tSNARE_6 170 237 IPR000727 -
Lal3g0904 448 SMART tSNARE_6 351 418 IPR000727 -
Lal3g0904 448 PANTHER SYNTAXIN 256 447 IPR045242 -
Lal3g0904 448 PANTHER SYNTAXIN 1 72 IPR045242 -
Lal3g0904 448 PANTHER SYNTAXIN 73 255 IPR045242 -
Lal3g0904 448 Gene3D - 363 427 - -
Lal3g0904 448 Gene3D - 182 242 - -
Lal3g0904 448 Gene3D - 243 306 - -
Lal3g0904 448 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 356 418 IPR000727 -
Lal3g0904 448 SUPERFAMILY SNARE fusion complex 173 237 - -
Lal3g0904 448 PANTHER SYNTAXIN PROTEIN 73 255 - -
Lal3g0904 448 PANTHER SYNTAXIN PROTEIN 256 447 - -
Lal3g0904 448 PANTHER SYNTAXIN PROTEIN 1 72 - -
Lal3g0904 448 SUPERFAMILY SNARE fusion complex 354 418 - -
Lal3g0904 448 CDD SNARE_Qc 359 416 - -
Lal3g0904 448 CDD SNARE_Qc 178 235 - -
Lal3g0904 448 Pfam SNARE domain 393 444 IPR000727 -
Lal3g0904 448 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 175 237 IPR000727 -
Lal3g0904 448 SUPERFAMILY t-snare proteins 5 122 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0904 Lal-Chr3 9133614 9145416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0904 257 448 SNARE and Associated Proteins AT1G28490 71.875 8.71e-94 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0904 K08500 - gmx:100787129 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0904 3 9133614 9145416 Lal18g1566 18 17319092 17322924 LSH
Lal3g0904 3 9133614 9145416 Lal18g1566 18 17319092 17322924 PCT
Lal18g1566 18 17319092 17322924 Lal3g0904 3 9133614 9145416 PCT