Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0889 ATGACAACCATTAATGATGCATCAAATGGTGAAAGTGGATTAGTATCAATGATCGGTGGCAGCGGTGGTGAAGGTGGTGGTGGTGGTAATGGTGGTGGTGGGGTGGAAGAGGTGGCTCTAAAGAAGGGTCCTTGGACAACGACAGAGGATGCTATTCTCATAGACTATGTGACAAAGCATGGTGAAGGAAACTGGAATGCGGTGCAGAGGAATACTGGGTTGGCTAGATGTGGCAAGAGTTGTAGGCTCAGATGGGCTAACCATTTGAGACCAAATTTGAAGAAGGGTGCTTTCTCCCATGAGGAAGAGAAACTCATTGTTGAGCTCCATTCACAGTTTGGCAACAAATGGGCTCGAATGGCTGCTTTGCGAGCGACATTTGTTGGAAGGGACACCACAGATCCCGAAAGAAAGAGAATACTCCCTGGGAGAACAGACAACGAAATCAAAAACTACTGGAACACAAGGGTGAAACGACGTCAGAGACAAGGTCTTCCACTATATTCACATGACAATGATCACCCTACAACACCCACTATACCCACCACCCCTTCTCAATTTCTCAACCAAACAGGATCAAACACAAACACAGTCACAAAGTTTGATTTTCTTCATCAAAACTATCATCACCATAGTCCACTTTCTCCAACAGCACAACAATCCCATCATCATCATTCTCCTCTATCTTCACCACTCAACCATAGACCACCACCTTCCTACTCCCCTCACCATTTCATGGACCCTACACCCTCCTATTCCAATCCACAATTGTCCTCAGCTGGACCTTCCTCTCTCTCCTTTACCTTCCAAAGACCAACACCAATGTTAGGTAACCCTCTTCGATTCAAGCGATACCGTTCCTCTCCAAACTTCAGCCTCCACCATCTCCCTTCCATCACCCCTTACTCAACCTCTGCACCCCCTGATCAGATGGCTGATTTTGATGCATTCATGTTCCCACAACAGAACAACTCCAGTTTTTCACCACAGTATTTTCAGACGGATTTGTTAGATTCCAATCGAATGGTTTCGACCCAGAATTCAGTTTTCTCAACCAAATTGGAGCTCCCTTCAAACCAATATTCTCAGCCACAACTGCAGCAAGAGATTAAGCATGATTTAGAGTTCAATGATCCTACTTTGCAAACAAGTAGTGGATTGCTAGGGGATCTTCTTTTTGAAGCTCAGGCAATAGCATCTGGCCAGAACTCGAAGAAACGAAATTATTTGAGCTTAAACGAAGGAAATGATGTGTTTGATGGATACCAAAACTTTGATGACTGGCCTCTTTGCTCTAATTACTGGTCTTCTTCTACTTCAGGTTCTTTGGATGAAAGGATGAAAGGAGAAAATAAGAAGAGAAAAATACGTGAGAAAGATAATGAAAAGAGAAAAAGATATGAGAAATAA 1410 0.4362 MTTINDASNGESGLVSMIGGSGGEGGGGGNGGGGVEEVALKKGPWTTTEDAILIDYVTKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGAFSHEEEKLIVELHSQFGNKWARMAALRATFVGRDTTDPERKRILPGRTDNEIKNYWNTRVKRRQRQGLPLYSHDNDHPTTPTIPTTPSQFLNQTGSNTNTVTKFDFLHQNYHHHSPLSPTAQQSHHHHSPLSSPLNHRPPPSYSPHHFMDPTPSYSNPQLSSAGPSSLSFTFQRPTPMLGNPLRFKRYRSSPNFSLHHLPSITPYSTSAPPDQMADFDAFMFPQQNNSSFSPQYFQTDLLDSNRMVSTQNSVFSTKLELPSNQYSQPQLQQEIKHDLEFNDPTLQTSSGLLGDLLFEAQAIASGQNSKKRNYLSLNEGNDVFDGYQNFDDWPLCSNYWSSSTSGSLDERMKGENKKRKIREKDNEKRKRYEK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0889 469 MobiDBLite consensus disorder prediction 1 35 - -
Lal3g0889 469 CDD SANT 44 89 IPR001005 -
Lal3g0889 469 Gene3D - 97 160 - -
Lal3g0889 469 CDD SANT 97 155 IPR001005 -
Lal3g0889 469 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 23 452 - -
Lal3g0889 469 Pfam Myb-like DNA-binding domain 95 155 IPR001005 -
Lal3g0889 469 Pfam Myb-like DNA-binding domain 42 89 IPR001005 -
Lal3g0889 469 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 161 IPR017930 -
Lal3g0889 469 MobiDBLite consensus disorder prediction 1 15 - -
Lal3g0889 469 SMART sant 94 159 IPR001005 -
Lal3g0889 469 SMART sant 41 91 IPR001005 -
Lal3g0889 469 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 23 452 - -
Lal3g0889 469 ProSiteProfiles Myb-like domain profile. 37 89 IPR001005 -
Lal3g0889 469 MobiDBLite consensus disorder prediction 208 272 - -
Lal3g0889 469 MobiDBLite consensus disorder prediction 246 272 - -
Lal3g0889 469 MobiDBLite consensus disorder prediction 160 194 - -
Lal3g0889 469 MobiDBLite consensus disorder prediction 445 469 - -
Lal3g0889 469 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 93 IPR017930 -
Lal3g0889 469 ProSiteProfiles Myb-like domain profile. 90 157 IPR001005 -
Lal3g0889 469 MobiDBLite consensus disorder prediction 437 469 - -
Lal3g0889 469 SUPERFAMILY Homeodomain-like 40 153 IPR009057 -
Lal3g0889 469 Gene3D - 41 94 - -
Lal3g0889 469 MobiDBLite consensus disorder prediction 170 194 - -
Lal3g0889 469 MobiDBLite consensus disorder prediction 210 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0889 Lal-Chr3 8748637 8751070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0889 39 174 MYB Transcription Factor Family AT2G32460 69.118 1.18e-61 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal3g0889 Myb_DNA-binding 5.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0889 - - lang:109329119 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0889 3 8748637 8751070 Lal3g0889 3 8748637 8751070 ECH