Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0881 ATGGATATAAAAGCAGCGCGTAGTAGTGAACAGCATTTTGATGTGAGGACCTGTGTTTATTGGCTAGCTGGGAAATGCAACAGAAATCGCTGCAGGTTTTTGCATAGTGTAACACGATCCCCATCACCATCACCGCATTCTACTGCACATTTTAATAAACCCAACAGTGCTTATCGGTATACAAGGAAGCTTCCTCATCATTATTCTTCTGAGATGAAGACCCCCAAGTATAATAACTCAAAGACAGTATTGATTACAATGACTGGCGAGACTGGAGGTGGAGAAGATGAGATGAGTGTCACTAAGACTTTTGAGAAGCCTTCACAGAGTTTGTGTATGTACTGGGTGAATGGCAATTGTGTACATGGTGACAAGTGCCAGAATTTGCATTCATGGTTTTATGGTGATGGGTTTTCAACATTAGCACTGCTTCAAGAACACAAGAAGGTTGTCACTGGGATTGCACTTCCTGTTGGATCTGAAAAACTTTATTCTGGAAGCACTGATGGAACAGTTCGACAATGGGATTGTCATACTGGCCGTTGTGCTAATGTCACACATTGTGGTGGCGAAGTTACCTCTTTGATCAGTGAGGGACCATGGATATTTGTTGGTGTGCACAATGCTGTCAAGGCTTGGAATATTCAGACTGCTTCAGAATTTAGTCTAGATGGACCTAAGGGGAAAGTCCTTGCGATGGTTGTTGGCAATGATATACTTTTTGCTGGAGCGCAGGATGGTGTTATTTCTGCATGGATAGGTAGTTCTGATGCCGAGTCCCCTTTCAAACTAGTTGCATTACTGGATGGCCACACTAAAGCTGTAGTGTGTCTGACGGTTGGAGGCAAGATGCTGTACTCAGGATCTATGGACCATAGCATAAAGGTTTGGGACCTTGATACGTTACAGTGTAAAATAACACTCCATGGACATACTAATGTAGTCACATCCCTTATTTGCTGGGACAATTATTTGCTATCAAGTTCATCTGACTGCACAATTAAGGTTTGGGTTGCCACTGAAGAGGGTACGTTGGAAGTAGCATATACGCACACCGAAGAAAATGGTGTTGTTGCACTTTGTGGGATGACCGGTGCAGAAGGCAAGCCTATATTGTTTTGTTCCTGTGGAGACAATTCAGTTCGCATGTATGAATTGCCATCATTTTCAGAAAGGGGTCGATTATTTGCAAAAAAAGAAATCCGTTCGATTGAGATAGGTCCCGGGGGACTCTTCTTCACCGGAGATGGTTCTGGCTTGCTAATGGTTTGGAGATGGTTTGAAGAGCCAAAGGTGGCATCCTCTTGA 1308 0.4343 MDIKAARSSEQHFDVRTCVYWLAGKCNRNRCRFLHSVTRSPSPSPHSTAHFNKPNSAYRYTRKLPHHYSSEMKTPKYNNSKTVLITMTGETGGGEDEMSVTKTFEKPSQSLCMYWVNGNCVHGDKCQNLHSWFYGDGFSTLALLQEHKKVVTGIALPVGSEKLYSGSTDGTVRQWDCHTGRCANVTHCGGEVTSLISEGPWIFVGVHNAVKAWNIQTASEFSLDGPKGKVLAMVVGNDILFAGAQDGVISAWIGSSDAESPFKLVALLDGHTKAVVCLTVGGKMLYSGSMDHSIKVWDLDTLQCKITLHGHTNVVTSLICWDNYLLSSSSDCTIKVWVATEEGTLEVAYTHTEENGVVALCGMTGAEGKPILFCSCGDNSVRMYELPSFSERGRLFAKKEIRSIEIGPGGLFFTGDGSGLLMVWRWFEEPKVASS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0881 435 SUPERFAMILY CCCH zinc finger 108 131 IPR036855 GO:0046872
Lal3g0881 435 ProSiteProfiles Zinc finger C3H1-type profile. 13 38 IPR000571 GO:0046872
Lal3g0881 435 Gene3D - 131 252 IPR015943 GO:0005515
Lal3g0881 435 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 1 434 - -
Lal3g0881 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 337 IPR001680 GO:0005515
Lal3g0881 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 301 - -
Lal3g0881 435 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
Lal3g0881 435 Gene3D - 253 434 IPR015943 GO:0005515
Lal3g0881 435 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Lal3g0881 435 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Lal3g0881 435 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Lal3g0881 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Lal3g0881 435 SMART c3hfinal6 12 37 IPR000571 GO:0046872
Lal3g0881 435 SMART c3hfinal6 106 132 IPR000571 GO:0046872
Lal3g0881 435 SUPERFAMILY WD40 repeat-like 139 429 IPR036322 GO:0005515
Lal3g0881 435 ProSiteProfiles Zinc finger C3H1-type profile. 106 133 IPR000571 GO:0046872
Lal3g0881 435 SMART WD40_4 301 338 IPR001680 GO:0005515
Lal3g0881 435 SMART WD40_4 344 385 IPR001680 GO:0005515
Lal3g0881 435 SMART WD40_4 137 176 IPR001680 GO:0005515
Lal3g0881 435 SMART WD40_4 388 425 IPR001680 GO:0005515
Lal3g0881 435 SMART WD40_4 216 253 IPR001680 GO:0005515
Lal3g0881 435 SMART WD40_4 261 298 IPR001680 GO:0005515
Lal3g0881 435 Pfam WD domain, G-beta repeat 144 176 IPR001680 GO:0005515
Lal3g0881 435 Pfam WD domain, G-beta repeat 264 298 IPR001680 GO:0005515
Lal3g0881 435 Pfam WD domain, G-beta repeat 303 337 IPR001680 GO:0005515
Lal3g0881 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 307 IPR001680 GO:0005515
Lal3g0881 435 Gene3D - 13 130 - -
Lal3g0881 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 176 - -
Lal3g0881 435 PANTHER - 1 434 IPR044715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0881 Lal-Chr3 8456266 8459716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0881 144 347 Acyl Lipid Metabolism Gene Families AT3G18860 29.258 6.83e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal3g0881 WD40 0.0011 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0881 - - aprc:113849178 624.394