Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0857 ATGGGAAGAGTAGGAGTCACCACCAAACCGGTAGCGGTTGGACTCAACGAACCCGGTTCGAGGCCGGTTTTTTTAGAGCCGAGATACCGGGGCGTCAGAAAAAGACCGTGGGGCCGGTTCGCCGCTGAGATTAGAGACCCGTTGAAGAAAGCAAGGGTGTGGCTTGGAACCTTTGATTCCGCCGAAGAAGCGGCGCGTGCATACGACGCGGCTTCCAGAACCCTCAGAGGTCCTAAGGCCAAGACTAATTTCCCTCTCCCACCACAATTCATCGACCACCATCAAAACTTCGTCGCCGCTGTTGCTGATCTTCCCGATCAACGGTTCCACGCTGCCGCTGATGGATTCTATTGCCACCAGAGACCCACCTCCAGCGGCATGAGCAGCACCGTCGAATCTTTCAGCGGTCCTCGTCCACCGTCGGTGAATCTGACTGCACCGGTGATAACTGCTTCACGGAGGTACCCTCGGACCCCTCCGGTGGTTTCCTCGGACTGCCGCAGCGATTGCGACTCGTCGTCGTCGGTGGTTGACAACGCTGATGACAACGCTGTTTCGTCGTCGGCGATGTCGTTTAAAAGAACACCGTTGCCGTTCGATCTAAACGCTCTGCCGTTGGAAGATGCTGACGTGGCGCTTGATGGTGGTGTTGATCTGCACTGCACTGTTCTCTGTCTCTGA 681 0.5653 MGRVGVTTKPVAVGLNEPGSRPVFLEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAASRTLRGPKAKTNFPLPPQFIDHHQNFVAAVADLPDQRFHAAADGFYCHQRPTSSGMSSTVESFSGPRPPSVNLTAPVITASRRYPRTPPVVSSDCRSDCDSSSSVVDNADDNAVSSSAMSFKRTPLPFDLNALPLEDADVALDGGVDLHCTVLCL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0857 226 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 202 - -
Lal3g0857 226 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Lal3g0857 226 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Lal3g0857 226 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Lal3g0857 226 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Lal3g0857 226 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Lal3g0857 226 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Lal3g0857 226 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Lal3g0857 226 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Lal3g0857 226 PANTHER ETHYLENE RESPONSE FACTOR 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0857 Lal-Chr3 8009899 8010579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0857 26 226 AP2-EREBP Transcription Factor Family AT3G20310 53.571 1.94e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal3g0857 AP2 6.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0857 K09286 - gmx:100782025 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0857 3 8009899 8010579 Lal3g0857 3 8009899 8010579 ECH
Lal3g0857 3 8009899 8010579 Lal18g1584 18 17409696 17410349 LSH
Lal3g0857 3 8009899 8010579 Lal18g1584 18 17409696 17410349 PCT
Lal3g0857 3 8009899 8010579 Lal22g0065 22 393726 394337 PCT
Lal3g0857 3 8009899 8010579 Lal6g0066 6 400589 401212 PCT
Lal18g1584 18 17409696 17410349 Lal3g0857 3 8009899 8010579 PCT
Lal22g0065 22 393726 394337 Lal3g0857 3 8009899 8010579 PCT
Lal6g0066 6 400589 401212 Lal3g0857 3 8009899 8010579 PCT