Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0854 ATGGGAAGCGAAGAAGAGAGGGTTCTGGAGAAGCAACTTGAGCTTCAATTGCAAGAGCAAAGGGATTCCCTCTCTGCTATTGATCATGCTATCCTTTCTGATCCATCCGATCCTGAACTTCTCGCGGTTCATGAGGAGCTTGTTCAGGCAATAAACGATGCAGAGGAAGGACTTCTTCACCTAAAACGTGCACGATTATTACAGGAAGCAGATTCAGTGCTGCATAGCATTAATCTTTTTTCTGAAGAAGAGAAAGTAGAGCCCCTAGACCCCACAAATGTCGAACCAGAGCCACTGGAGAAAAGTTGTTATCCTGTTGGATCTAAATGTAGATTTCGCCACATAGATGGGCGTTGGTACAATGGTCAAGTGGCGCTATTGGATAATTCAATGGCAAAGGTTTCATTCCTTAATCCTACATCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGGTTTGGTACTAACTGTCGTCTATCACATGGAGTTGATGTTCAATTGTCCTCGCTGAAGAAATATATCCCAACAATCTGGAATCCATCACTTGTGGGGTCAAGCATATGGGCAGTCTCAAATGTTAATCCGGGCATTTACAGGGAAGCTGAGCTTGAGTCTTGGGATGAAAAAGCTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCTATGAAGGTTGGGGCAGAAGAAATGATATTATCTGAGTATGCTGAAGTGAGTGATTTAGAGAGCGATTCCAGCTCCGAACAATCCGATGCTAGCGATGATGAGGAAGAGGAATCACAAGGTTTAGGATTTATGGAGACCACTAACCAACAGAGGGGCATTCAGACTGAAACTGCTATATTTGCCAAGTGGGAGAGCCATACTAGAGGTATCGCTTCCAAAATGATGGCTAATATGGGTTATCGAGAAGGAATGGGTTTAGGACTAACTGGTCAGGGGATGTTAAATCCCATACCAGTGAAAGTCCTACCACCGAAGCAATCCTTAGATCATGCACTGGACTCTCACAAAAATGAGATCACGGACAAGAAAGGTAAGAAACGGAGCAGAGGTGGTAAGAGAAAACGTGATAAAAAATTTGCAGAAGCAAATTCTGCAGCAAAAGAGGAAGAAAATTCGGCATCAGATGTCTTCGCACTAATAAATAATCAACTGGCAATGCACAATGAAACTTTAAATGGTGGATCAATGAAGAAGCAGCAAAGTAAAGGTTCAGGGGAAGGTAAAAAGGTGGATAGGCGGATTTTGATTGCTTATGAGGACGACGTGAAGGATTTGAAAGTGCGTGTCGAAAAGCTTGAAGAAATTGTGAATATAAACAGAAAAGAGAAGGTTGTTTTTGAAGCTGCAATGAGAAAATTAATTGAAACCCGCAAGGCTTTAGCAGAGGCTGAAGCAGCTCATGTCTCTGCTTCAAATGCAGTTGTTAGCAAAGAAAAAGAGAAGCGTTGGCTTAAGTTCTAG 1482 0.4238 MGSEEERVLEKQLELQLQEQRDSLSAIDHAILSDPSDPELLAVHEELVQAINDAEEGLLHLKRARLLQEADSVLHSINLFSEEEKVEPLDPTNVEPEPLEKSCYPVGSKCRFRHIDGRWYNGQVALLDNSMAKVSFLNPTSENMLMCKFFLQQRCRFGTNCRLSHGVDVQLSSLKKYIPTIWNPSLVGSSIWAVSNVNPGIYREAELESWDEKAGVGQVVFRDDGSSMKVGAEEMILSEYAEVSDLESDSSSEQSDASDDEEEESQGLGFMETTNQQRGIQTETAIFAKWESHTRGIASKMMANMGYREGMGLGLTGQGMLNPIPVKVLPPKQSLDHALDSHKNEITDKKGKKRSRGGKRKRDKKFAEANSAAKEEENSASDVFALINNQLAMHNETLNGGSMKKQQSKGSGEGKKVDRRILIAYEDDVKDLKVRVEKLEEIVNINRKEKVVFEAAMRKLIETRKALAEAEAAHVSASNAVVSKEKEKRWLKF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0854 493 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Lal3g0854 493 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Lal3g0854 493 Coils Coil 422 449 - -
Lal3g0854 493 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Lal3g0854 493 SMART G-patch_5 292 338 IPR000467 GO:0003676
Lal3g0854 493 MobiDBLite consensus disorder prediction 252 267 - -
Lal3g0854 493 Pfam G-patch domain 294 336 IPR000467 GO:0003676
Lal3g0854 493 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 493 - -
Lal3g0854 493 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
Lal3g0854 493 Coils Coil 453 473 - -
Lal3g0854 493 Gene3D - 120 178 - -
Lal3g0854 493 MobiDBLite consensus disorder prediction 243 276 - -
Lal3g0854 493 MobiDBLite consensus disorder prediction 340 374 - -
Lal3g0854 493 SMART c3hfinal6 141 167 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0854 Lal-Chr3 7962233 7968794 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal3g0854 G-patch 2.8e-12 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0854 - - gmx:100796284 704.516