Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0847 ATGACATTTCTTAAAAACACATATAACAATCCAGGTTTTGCACATGCTAATGCAGTAGGCATACTTCCAGCATTAGCAGCTAAAGTTGAAGGTAATAGAAGTGCCTTCTATAACTGTTCCTTTAAAGGAGTGCAAGATACCTTATGGGATCGTAGTGGACTACATTATTACTATAATTGCTACATTCAAGGTGCAATAGATTTCATATTTGGAGATGGTCAATCCATCTATGAGAAATGTGCCATAAATTTTACAACGGGGATTGATGGACCTACTATTGACGGTGTTATAACAGCACAAAAACGAGAATCAACTGATTCCACAAGTGGGTTTGTGTTTAAAGAATGTACTATAAATGGGATTAATGGGAAGGCTGAACTTGGAAGAGCATATGGCCCTTACTCTAGAGTTATCATTGCTAATTCATATCTCTCAGATATTGTTCGACCTGAAGGTTGGTCTACTTGGGACAAACCAGAGGAAAATATTATATATGTGGAGGTGAATAATACTGGACCTGGAGCAAATAATGCTAACCGTGTGAAGTGGATGAAGACTTTGAGTGAAGATGAGTTAAACAGTTTCTTACACATTTCTTATGTAGACAAAGATGGATGGATTCACAAACAACGCAATGCTAATAATTTTTAA 651 0.3641 MTFLKNTYNNPGFAHANAVGILPALAAKVEGNRSAFYNCSFKGVQDTLWDRSGLHYYYNCYIQGAIDFIFGDGQSIYEKCAINFTTGIDGPTIDGVITAQKRESTDSTSGFVFKECTINGINGKAELGRAYGPYSRVIIANSYLSDIVRPEGWSTWDKPEENIIYVEVNNTGPGANNANRVKWMKTLSEDELNSFLHISYVDKDGWIHKQRNANNF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0847 216 Gene3D - 2 215 IPR012334 -
Lal3g0847 216 ProSitePatterns Pectinesterase signature 2. 62 71 IPR033131 -
Lal3g0847 216 PANTHER PECTINESTERASE 15 209 - -
Lal3g0847 216 Pfam Pectinesterase 23 201 IPR000070 GO:0030599|GO:0042545
Lal3g0847 216 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 15 209 - -
Lal3g0847 216 SUPERFAMILY Pectin lyase-like 23 208 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0847 Lal-Chr3 7823450 7824616 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0847 24 208 Carbohydrate Esterase AT1G05310 41.053 1.32e-48 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0847 - - lang:109339855 402.519