Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0798 ATGGATGAAGGTGAGAGCGGGAATCCCATGTTTCAGTTCCACCGTAACGAAGCTATATCAGCTGTTGCCGACGACGGTTTTTTGGCTGAGGAAGATGATGATTACGATGACCTTTACAACGATGTCAATGTTGGTGAAGGGTTCCTTCAATCCTTGAACAAGAACAACAATAACAATGATGATTTAGGGTTTAGAAACGATGATGTTAAGTCACAGTCAGCGCCGGTGAACCATGGTGCGATTGGGGTTTCCGTACCTGGTGTCAAGGGTGAGAGTACCGGTGGTGATGGTGGTGGAGGAGGAGTTTCTGATGGAGGTGATGGGTTACAGAATCAAGGGTTAAGAGGGGTTGAGGTTGGTGTGAAAGGGGGTGGTGGATCGGGTGGTGGATCGGGCGGTGGAGGTGGAATTAGGGTTGAATTAGGGAAGCCATCTGTGAAATTGAGTGAGATCGAGGAGCAGATTGGTAATGATAATAGTGTTGGAGTGCAGCAAGCAATTGGTGGAGTTGTTGGAAGTGTGGGAAATGAGGGTTTGGTGAGGCAAAGTGGTGTTGTTGGTGTAAATATTAATAGGGTTGGTGGAAATAGTGTGAGTGCTGTTACTGGTGTTAACACTGCTGCCGGTGGTGGTGGTGCCGCTGCTGTGGCTTCTGGTGGTGGTGGTGGTGGTGCAGCTGCTGCTGGGGGTACCGTATTGTTTGTGGGTGATTTGCATTGGTGGACTACTGATGCTGAGCTGGAGGCTGTGCTTTGTAATTATGGGCCAGTCAAGGAGGTGAAGTTTTTCGACGAGAAAGCCAGTGGGAAATCCAAAGGGTACTGCCAAGTTGAGTTTTTTGAACCTTATGCTGCAACTGCTTGTAAGGAAGGGATGAATGGGCATGTGTTTAATGGGAGGCCTTGTGTTGTTGCTTATGCGTCGCCATTTACAGTTAAGAAAATGGGAGAGGCTCAAGTGAATAGGAATCAGCAGGTGACTCAATCTGCTCCTCCCCAGCAGGGAAGGAGGGGGCCTGCTTCTGATGTAGGGCCCAAGCCTGGTGGTAGTAATATTGCTACCGGGGGGAACTACCAAGGTGGAGATGGGAATAATAGAGGAGGTTATGGAAGAGGTAACTGGGGAAGAGGGAATAATCCCGGGATGGGGAATAGGGGGGCTGTTAATCCGATGAGGAATAGGGGTGGTTGGATGGGAGGTAGAGGTATAATGGGAAATGGTGGGAATGGCTTTGGACAGGGTATTGGCGGCACCCCGCCTATGATGCATCCCCAGTCAATGATGAATCAGGGTTTTGATCCTGCATTTGGCGGTCCCATGGGTAGAATGGGTGGCTATGGAGGCTTTCCTGGTGGTCCCATGCCTCCATTCTCTGGGATGTTGCCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTACCGGGAGTAGCGCCTCATGTTAATCCAGCCTTTTTTGGAAGAGGAATGCCTATGAATGGTATGGGGATGATGCCCACACCTGGTATGGATGGTCCTAATATGGGAATGTGGTCGGATCCAAGTATGGGTGGATGGGGTGGTGAAGAGCATGGTGGTGGCAAGGCTGGAGAATCAAGTTATGGGGAGGAAGCTGCATCCGACCACCAATACGGTGAGGCTAGTCATGATAGAACTGGGTGGACTAATAATGCTAGGGAAAAAGATAGAGGGCCGGAAAGGGACTGGTCTGGTACTTCTGAGCGAAGGCATAGGGATGATAGAGATCAAGGATATGAGAGAGATGCTCCTATAGAGAAAGATATGGGCCACGACCAGGAATGGTCAGAGAGAAGGCACCGTAATGATAGAGAAGTGAGCCGAGAACGAGACAGGGGTCGTGAACAATCTCGAGACCGTGGTCGTGAAAGGGATCGGGAACGAGAGCATGACAGGTACAAGGAAGATAGGGACAGATATGCTGATCATCATAGGCAAAGAGACCGCGAAGCAGAGCATGAAGAGGAATGGGAAAGGGGTCAGTCATCTAGGGCTCGCAGCAAATCACGATTTTTACAGGAGGAGGATCACCATTCTAGGTCAAGAGATGCTGATTATGGGAAGAGGAGGCGCCTCACCTCTGAGTGA 2100 0.501 MDEGESGNPMFQFHRNEAISAVADDGFLAEEDDDYDDLYNDVNVGEGFLQSLNKNNNNNDDLGFRNDDVKSQSAPVNHGAIGVSVPGVKGESTGGDGGGGGVSDGGDGLQNQGLRGVEVGVKGGGGSGGGSGGGGGIRVELGKPSVKLSEIEEQIGNDNSVGVQQAIGGVVGSVGNEGLVRQSGVVGVNINRVGGNSVSAVTGVNTAAGGGGAAAVASGGGGGGAAAAGGTVLFVGDLHWWTTDAELEAVLCNYGPVKEVKFFDEKASGKSKGYCQVEFFEPYAATACKEGMNGHVFNGRPCVVAYASPFTVKKMGEAQVNRNQQVTQSAPPQQGRRGPASDVGPKPGGSNIATGGNYQGGDGNNRGGYGRGNWGRGNNPGMGNRGAVNPMRNRGGWMGGRGIMGNGGNGFGQGIGGTPPMMHPQSMMNQGFDPAFGGPMGRMGGYGGFPGGPMPPFSGMLPSFPGVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTPGMDGPNMGMWSDPSMGGWGGEEHGGGKAGESSYGEEAASDHQYGEASHDRTGWTNNAREKDRGPERDWSGTSERRHRDDRDQGYERDAPIEKDMGHDQEWSERRHRNDREVSRERDRGREQSRDRGRERDREREHDRYKEDRDRYADHHRQRDREAEHEEEWERGQSSRARSKSRFLQEEDHHSRSRDADYGKRRRLTSE 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0798 699 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 698 - -
Lal3g0798 699 SMART rrm1_1 232 305 IPR000504 GO:0003723
Lal3g0798 699 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 698 IPR034772 -
Lal3g0798 699 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 302 IPR000504 GO:0003723
Lal3g0798 699 Gene3D - 224 417 IPR012677 -
Lal3g0798 699 MobiDBLite consensus disorder prediction 502 699 - -
Lal3g0798 699 SUPERFAMILY RNA-binding domain, RBD 229 319 IPR035979 GO:0003676
Lal3g0798 699 MobiDBLite consensus disorder prediction 540 699 - -
Lal3g0798 699 MobiDBLite consensus disorder prediction 79 111 - -
Lal3g0798 699 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 309 IPR000504 GO:0003723
Lal3g0798 699 MobiDBLite consensus disorder prediction 321 335 - -
Lal3g0798 699 MobiDBLite consensus disorder prediction 321 392 - -
Lal3g0798 699 CDD RRM_CFIm68_CFIm59 233 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0798 Lal-Chr3 7225978 7228077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0798 211 307 Eukaryotic Initiation Factors Gene Family AT4G34110 33.000 1.86e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0798 K14398 - gmx:100813702 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0798 3 7225978 7228077 Lal3g0798 3 7225978 7228077 ECH