Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0774 ATGAGTACCCTAGGTCCAACGGAGTTATTGTATAATTCAAGAAACATGGTTTCAAGTTCTTCATCAGAAGATAGAATGGGTAGTGCCCTAAACAGGCCTTCATTTTTGACTAGAATGGCAATGAGAATATCTAGAGCAAGATGGTTTAGCTTCTTGAGAAGAGTATTCCACTACCAAAATGGGTCATCATCAGGATCTGATCTTGGTTCTAATCCTTTCAATACTAAAACATGGATGATGCTTGAGTTTGTTGCTTTAATGGTCCAAGTAACTAGTGCAACAATCACTTTGGCCATTTCAAAAAGTGAGAGACCAATTTGGCCTATGAGAATATGGATTGCAGGTTATGATATTGGTTGTGTCCTTAATCTGCTTGTACTTTATGGCCGCTACCATCAACTTTATGTGACTAATCATCATGGTAATGCTATTGGCCTTTCTAATATGGAGCACCAGGGAAATAATGAAGAAACCAGCACCTTCCTTGGATATAACATGAACATGGGTTCCTCTTCTAGAGGAGCATCTTATGATCAAATCTCACATCTTTCAAGTTGGAGATATCAAAAAGTTCATACCCAATTAGAGCATGGCAATGACTCTCAAAGTAGTGAAAGATTGACCCATGAAGATCCAGAATGTTGCATTTGCCTAGCCAAATACAAAGACAAAGAAGAAGTTAGGCAATTACCCTGTTCCCATTTGTTTCACCAAAAATGTGTGGATCAATGGCTCAGAATTATATCTTGTTGCCCTCTTTGTAAACAAGAATTACAGAGGTAG 783 0.3819 MSTLGPTELLYNSRNMVSSSSSEDRMGSALNRPSFLTRMAMRISRARWFSFLRRVFHYQNGSSSGSDLGSNPFNTKTWMMLEFVALMVQVTSATITLAISKSERPIWPMRIWIAGYDIGCVLNLLVLYGRYHQLYVTNHHGNAIGLSNMEHQGNNEETSTFLGYNMNMGSSSRGASYDQISHLSSWRYQKVHTQLEHGNDSQSSERLTHEDPECCICLAKYKDKEEVRQLPCSHLFHQKCVDQWLRIISCCPLCKQELQR 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0774 260 Pfam Ring finger domain 213 255 IPR001841 -
Lal3g0774 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 260 IPR013083 -
Lal3g0774 260 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Lal3g0774 260 SUPERFAMILY RING/U-box 205 258 - -
Lal3g0774 260 CDD RING-H2_RNF111_like 212 255 - -
Lal3g0774 260 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 23 158 - -
Lal3g0774 260 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 159 258 - -
Lal3g0774 260 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 159 258 - -
Lal3g0774 260 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 23 158 - -
Lal3g0774 260 SMART ring_2 214 254 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0774 Lal-Chr3 6931828 6935295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0774 159 191 C3H Transcription Factor Family AT5G55970 63.636 2.06e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0774 - - aip:107609704 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0774 3 6931828 6935295 Lal3g0774 3 6931828 6935295 ECH