Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0757 ATGAAAGTTACCTCCAGAAGGTCTTTGCCAATGGATACTAAATCAGCTGTAGATTTAATGGAGTCTTCCTCCGAGGTTCATTTTTCAGGATTTCACATGGATAGTTTTGAGCAAAGAAAGGATGGCACTGAACAGCCAACAACATCAGCAACTAACATGTACAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCGGGCAAGACAACAGTTTGTGATATGATTATTCAGCAACTTCATGACCAACGAGTTGTACTGGTTAATCAGGATTCTTTTTACCATAACTTGACTGAGGAAGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCCGACGCTTTTGATATTGAGCAATTGCTACGCGTTATGGACAAGCTGAAGTGTGGCGAAGCAGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAGAGTGATCTGCTTCCATCAAGAAGGGTAAACCCTTCAGATGTTATAATTTTGGAAGGAATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCGGATGTTCGTTTAGCTAGAAGGATTAGGCGTGATACTGCTGAGAAGGGTCGAGATATTGGAACAGTTCTTGATCAATATTCAAAATTCGTGAAGCCTGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCTCGTGGAGGAGATAATCATGTAGCTGTTGATTTGATTGTACAACATATCCGCACAAAGCTTGGTCAACATGACCTATGTAAAATATATCCCAATTTATATGTGATTCATTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCCCAGATAACAAAACATGATTTTGTATTTTATTCTGATCGATTGATTCGTTTGGTTGTAGAACATGGCTTGGGGCATCTTCCATTTACAGAAAAGCAAGTAATCACTCCCACTGGTTCTGTATACACTGGTGTGGATTTTTGTAAGAGGTTATGCGGCGTCTCTGTCATCAGGAGTGGGGAGAGTATGGAGAATGCTCTTCGAGCGTGTTGTAAAGGTATCAAGATTGGGAAAATTCTAATTCATAGAGAAGGTGACAATGGTCAACAGCTAATATATGAGAAGTTGCCAAATGATATCTCTGATAGGCATGTGTTATTGTTGGATCCTATCCTTGGCACAGGTAACTCTGCTGTTCAAGCAATTTCTTTACTTTTAAGAAAGGGTGTACCAGAGTCCAACATCATATTCCTTAATCTCATATCTGCACCTCTAGGTGTGCATGTGGTCTGCAAAAGCTTCCCAAGAATAAAAATAGTGACATCCGAGATCGAGATTGGTTTGAACAAAGATTTCCGCGTCGTACCAGGCATGGGTGAGTTCGGAGATCGCTACTTCGGAACAGATGATGATGATGAGCAGGTGGTGGCTTCTTCACAGTAG 1467 0.4022 MKVTSRRSLPMDTKSAVDLMESSSEVHFSGFHMDSFEQRKDGTEQPTTSATNMYKQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEEELTRVQDYNFDHPDAFDIEQLLRVMDKLKCGEAVDIPKYDFKSYKSDLLPSRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTAEKGRDIGTVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAVDLIVQHIRTKLGQHDLCKIYPNLYVIHSTFQIRGMHTLIRDAQITKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLLRKGVPESNIIFLNLISAPLGVHVVCKSFPRIKIVTSEIEIGLNKDFRVVPGMGEFGDRYFGTDDDDEQVVASSQ 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0757 488 Gene3D - 261 476 IPR029057 -
Lal3g0757 488 Gene3D - 53 260 IPR027417 -
Lal3g0757 488 PANTHER URIDINE KINASE 25 479 - -
Lal3g0757 488 CDD UMPK 59 257 IPR000764 -
Lal3g0757 488 Pfam Phosphoribulokinase / Uridine kinase family 59 245 IPR006083 GO:0005524|GO:0016301
Lal3g0757 488 SUPERFAMILY PRTase-like 260 477 IPR029057 -
Lal3g0757 488 CDD PRTases_typeI 334 449 IPR000836 -
Lal3g0757 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 250 IPR027417 -
Lal3g0757 488 TIGRFAM udk: uridine kinase 55 257 IPR000764 -
Lal3g0757 488 PRINTS Uridine kinase signature 57 74 - -
Lal3g0757 488 PRINTS Uridine kinase signature 87 98 - -
Lal3g0757 488 PRINTS Uridine kinase signature 132 147 - -
Lal3g0757 488 PRINTS Uridine kinase signature 189 199 - -
Lal3g0757 488 PRINTS Uridine kinase signature 203 214 - -
Lal3g0757 488 PRINTS Uridine kinase signature 225 238 - -
Lal3g0757 488 Pfam Uracil phosphoribosyltransferase 275 476 - -
Lal3g0757 488 PANTHER URIDINE KINASE 25 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0757 Lal-Chr3 6519851 6526868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0757 11 479 PRT Gene Family AT4G26510 82.803 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0757 K00876 - gmx:100527893 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0757 3 6519851 6526868 Lal3g0757 3 6519851 6526868 ECH
Lal3g0757 3 6519851 6526868 Lal18g1629 18 17684430 17691549 LSH
Lal3g0757 3 6519851 6526868 Lal18g1629 18 17684430 17691549 PCT
Lal18g1629 18 17684430 17691549 Lal3g0757 3 6519851 6526868 PCT