Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0753 ATGAAGATCACTGTTATGACTGCTGATGAACAAATAATTACGTTGGATGTGGATTCCCACGAATCTGTGGAAAACGTTAAAGCATTGCTTGAAGTTGAGACAAGTGTGCCTCTTCAGCAACAGCAGCTTCTGTTTAATGGGAATGAGGTGAGGAATTCTGACAAGTTAAGTGCCCTTGGTGTTAAGGATGATGATTTATTAATGTTGGTCTCTTCTGCTGCTGCTGCTGCTTCTAGTGGATCTACCGATGATTTACGTGTAAATGCTGATGGATCTGCTGCAAACCCTGGTGCTTTCCAGCAGCGCATTAGACATGATTCTGATTTGATGGGCCGTCTCTATCAGAATGACCCGGAGTTGGCACAAGCTATTCTAGGGAACGATCTTAATAGATTGCAGGAAATTTTACGATTGCGTCATCGCCAAAGAAATGAATTTCAGCGTCAGAAAGAAGAAGAGCTTGCTCTTCTATATGCCGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGTCAGAAAGGAATTGATGAAAATTGGGAAGCTGCTTTAGAGCATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTCGACATGGAGGTTAATGGTGTCCCACTGAAGGCATTTGTAGATAGTGGAGCCCAGTCTACCATCATATCAAAAAGCTGTGCTGAGCGTTTGGGATTGTTGAGACTTTTAGATCAGCGTTACAAAGGAATAGCCCATGGAGTTGGCCAATCAGAAATATTGGGTCGAATACATGTAGCTCCAATCAAGATTGGAAATGCATTTTATCCGTGCTCATTCTTAGTGCTGGATTCTCCCAATATGGAGTTTCTCTTTGGGCTGGATATGCTCCGAAAACACCAGTGTATAATTGATTTAAAAGAAAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCAGTGCCATTCTTGCAAGAAAAAGACATACCATCTCGGTTTCTAGATGAGGAAAAGTATGCTAAGGAAGCTTCAAGCTCAGGTGGCCCGGTTACATCTGGGACTGCAAATCCATCACAAGGTCAGGCTTCTGGAGGAGCTTCTGGTAACAGGTCTAAGGATTCTGGTTTTGAAGCCAAAGTTGCAAAGCTTGTCGAGTTGGGATTTGGAAGAGATGCAGTTGTACAAGCTCTTCAATTATTCAATGGTAATGAGGAACAAGCTGCTGGCTTTCTCTTTGGGGGCTGA 1224 0.4289 MKITVMTADEQIITLDVDSHESVENVKALLEVETSVPLQQQQLLFNGNEVRNSDKLSALGVKDDDLLMLVSSAAAAASSGSTDDLRVNADGSAANPGAFQQRIRHDSDLMGRLYQNDPELAQAILGNDLNRLQEILRLRHRQRNEFQRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWEAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERLGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGNAFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRFLDEEKYAKEASSSGGPVTSGTANPSQGQASGGASGNRSKDSGFEAKVAKLVELGFGRDAVVQALQLFNGNEEQAAGFLFGG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0753 407 Pfam UBA/TS-N domain 370 403 IPR015940 -
Lal3g0753 407 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Lal3g0753 407 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Lal3g0753 407 MobiDBLite consensus disorder prediction 336 366 - -
Lal3g0753 407 Gene3D - 338 407 - -
Lal3g0753 407 SMART ubq_7 1 72 IPR000626 GO:0005515
Lal3g0753 407 Gene3D - 1 84 - -
Lal3g0753 407 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Lal3g0753 407 CDD UBA_scDdi1_like 370 405 - -
Lal3g0753 407 CDD RP_DDI 184 307 IPR019103 GO:0004190|GO:0006508
Lal3g0753 407 PRINTS Ubiquitin signature 11 31 IPR019956 -
Lal3g0753 407 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lal3g0753 407 SUPERFAMILY Acid proteases 184 300 IPR021109 -
Lal3g0753 407 MobiDBLite consensus disorder prediction 338 363 - -
Lal3g0753 407 SMART uba_6 369 406 IPR015940 -
Lal3g0753 407 Pfam Aspartyl protease 177 299 IPR019103 GO:0004190|GO:0006508
Lal3g0753 407 SUPERFAMILY UBA-like 360 407 IPR009060 GO:0005515
Lal3g0753 407 Gene3D Acid Proteases 178 324 IPR021109 -
Lal3g0753 407 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Lal3g0753 407 Coils Coil 132 152 - -
Lal3g0753 407 PANTHER AT13091P 1 405 - -
Lal3g0753 407 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 364 407 IPR015940 -
Lal3g0753 407 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 405 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0753 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 2.13e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0753 K11885 - gmx:100779464 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0753 3 6476563 6484035 Lal3g0753 3 6476563 6484035 ECH