Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0744 AGACTTAAAAAGACCAAGACTTTCAACACTGTTACAAATTTTTTATTTTATATTATAGTATTAATTAGTAATTTCTGGTGCAAAATTGTGAGTGGGAGTTTGAGAGAGGGAAATCAGATTGGCCCTTTGAATTTCATCTCAGATTCTGAACAACCAAAATCTAGGTTTTTTTTTTGTTCTTCCCGGGGATCTGAAGATATGCAATCCAAGTCTGAAACAAATAGAATAAGTTTGGGTCCGCATTCCTTTCAACCCAGCAATGGTTATGCTGAACATTGGTGGCATGGTATTGGGTACAATCCCATCGCCCAAACAATGTGTGGGGCTAATACGACCAACTCATCCTCTCTTGGTTGCCCTAATGGCGATTCAGAATCCAATGAAGACAGCCAGTCTTTGTCAAATAGTCGAATGAATGAGGAAGATGATAGCGCTACTAAAGATTCCCAAATTGCTGCTCCTAATCAATCAGAAAATTATGGACAAGATCACCAAGGGGTGCAGCATACTTCGGCATCCGCACCTTTCATGCGTGAAGGCGGTCAAACTCAGACTCCTCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTTTCAAGATCCATGCTATGGAGGTGTGATGGCAGCTTATGGACACCAGCAGTTGGGATATGCTCCTTTTATGGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCACAAGAGCCTGTTTATGTCAATGCTAAACAATACAAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAGGCAGAACTTGAAAGGAAGCTAATAAAAGTTAGAAAGCCGTATCTTCATGAATCTCGTCATCAGCATGCTCTGAGAAGGGCAAGGAGTAACGGGGGACGTTTTGCAAAGAAATCTGATGCCGAAGCCTCAGGCAAGGAAAAGGATACGGCTCCTGGTCCAGTCCTGTCATCACAATCAATCAGTTCATCGGGTTCTGAACCTTTACCTTCTGACTCTGCCGAAACCTGGAACTCTCCAACCATGCTGCAACAAGATGTAAGAGGATCAAATGCACACAACAGGTTCGAAGCACCCAATTATGAAAATGGTAGTGGCTCCTACCATAATAATAACAATGGTTTGCAATCTGCAACTTATCATATGCACTCAGGTGAGAGAGCAGAAGATGGCGACTGCTCTGGTCAGCAACGGGGAAGCATATCTTCCGAGCACGCCTCGCAGAGGCGTCTTGCTATACAGTAG 1248 0.4391 RLKKTKTFNTVTNFLFYIIVLISNFWCKIVSGSLREGNQIGPLNFISDSEQPKSRFFFCSSRGSEDMQSKSETNRISLGPHSFQPSNGYAEHWWHGIGYNPIAQTMCGANTTNSSSLGCPNGDSESNEDSQSLSNSRMNEEDDSATKDSQIAAPNQSENYGQDHQGVQHTSASAPFMREGGQTQTPQLELVGHSIACATNPFQDPCYGGVMAAYGHQQLGYAPFMGMPHARMPLPLEMAQEPVYVNAKQYKGILRRRQARAKAELERKLIKVRKPYLHESRHQHALRRARSNGGRFAKKSDAEASGKEKDTAPGPVLSSQSISSSGSEPLPSDSAETWNSPTMLQQDVRGSNAHNRFEAPNYENGSGSYHNNNNGLQSATYHMHSGERAEDGDCSGQQRGSISSEHASQRRLAIQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0744 415 MobiDBLite consensus disorder prediction 294 308 - -
Lal3g0744 415 MobiDBLite consensus disorder prediction 276 338 - -
Lal3g0744 415 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 241 296 IPR001289 GO:0003700|GO:0006355
Lal3g0744 415 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 96 406 - -
Lal3g0744 415 ProSiteProfiles NF-YA/HAP2 family profile. 239 299 IPR001289 GO:0003700|GO:0006355
Lal3g0744 415 MobiDBLite consensus disorder prediction 314 338 - -
Lal3g0744 415 MobiDBLite consensus disorder prediction 114 149 - -
Lal3g0744 415 MobiDBLite consensus disorder prediction 276 293 - -
Lal3g0744 415 MobiDBLite consensus disorder prediction 114 139 - -
Lal3g0744 415 PRINTS CCAAT-binding transcription factor subunit B signature 242 264 IPR001289 GO:0003700|GO:0006355
Lal3g0744 415 PRINTS CCAAT-binding transcription factor subunit B signature 273 296 IPR001289 GO:0003700|GO:0006355
Lal3g0744 415 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 96 406 IPR001289 GO:0003700|GO:0006355
Lal3g0744 415 MobiDBLite consensus disorder prediction 355 415 - -
Lal3g0744 415 SMART cbf3 238 299 IPR001289 GO:0003700|GO:0006355
Lal3g0744 415 MobiDBLite consensus disorder prediction 355 381 - -
Lal3g0744 415 ProSitePatterns NF-YA/HAP2 subunit signature. 244 264 IPR018362 GO:0003677|GO:0016602
Lal3g0744 415 MobiDBLite consensus disorder prediction 396 415 - -
Lal3g0744 415 Gene3D - 239 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0744 Lal-Chr3 6395883 6400128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0744 81 340 CCAAT-HAP2 Transcription Factor Family AT5G12840 50.758 3.76e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lal3g0744 CBFB_NFYA 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0744 K08064 - gmx:100808378 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0873 5 10038497 10043346 Lal3g0744 3 6395883 6400128 LSH
Lal3g0744 3 6395883 6400128 Lal11g0891 11 11662660 11668151 LSH