Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0713 ATGGCTACCATTACCACAATCTTCAACAACTTCCTTTCTCTTCTCTTCATTCTCCTTCTTCACCTTGGTTGCTTTATCTTCATTACCAAACAAGAAAACTCATCATTAAAGAAACGCAAAATCTCACCTTTATCTCAACCCTCTTCTCCTACCAACCCTAAATTTAAAACCCACAAAGCCCTTTCCTCTTCTTGGCATTTCATCAAACACCTCTTCTCCATAAAATCTACCAAGACCACAAATACCACCCATTTATCACCGCAATCTGAATCCACCGCTGCAACCACTACTGTCAACACCACCGCCGCCGCACATTCTTTGAATTCCGGCAGGTTCTCCCAGGCACATCAAGAATCAGATTTTCCGGATCCTCGAAGCAGAAAAATAACCGGGTCTGGCCCTGAATCCGATATATCCGCCGATAACAACCTCTTCTTCCCCCTCCGTAACGACATCTTTCCATGCACTGCGTGCGGCGAGGTTTTCCAAAAGCCTAACCTCCTCGAACAACACCAAACGATCAAGCACGCTTTATCGGAACTTTCAGGATCCGACCCGGGTCACAACATCGTTCAGATCATATTCAAGTCGGGTTGGCCTGAGAATAGTAATCCCCCAAACATAACCCGGATTCTGAAGATCAACAACAGCACCAAAATCCTCTCAAAATTTGAGGAGTACCGTGAAATAGTGAAGGCTAAAGCGGCGCGTGCAATCACGCGCCGCCGTGACGAGCGGTGCATTGCAGATGGGAACGAGCTCATGCGGTTTCACTGTTCCACATTTCTTTGCGAGTTGGGACTCAATGGGGATTCTAAAATTTGTTCGCAGCAATTTTGTAATATTTGTGGGATCATTAAATCCGGTTTTTCGTCTAAGCTGGATGGCATTTCCACGATGTCATCCAGCTGGAAGGCACACATGTCAATTCCTGAGGAGGTCGAGCAAGAGTTCCACTTCATGAATGTGAAGCGGGCCATGCTTGTTTGTCGGGTTATTGCGGGTTGGGTCGGATCAGTCTCAGATGAAGTGGATAAACAGAATGGGGAGTTTGATTCCTTGATGGCACGTGGTGGGTGTGGAGTTCACACTAGGCTTGATGAGGAGGAGCTATTGGTGTTTAATCCAAGGGCTGTGCTTCCTTGCTTTGTAATTGTCTATGTTTGGGAGGCACCTCTTTCTTTTTAA 1188 0.4638 MATITTIFNNFLSLLFILLLHLGCFIFITKQENSSLKKRKISPLSQPSSPTNPKFKTHKALSSSWHFIKHLFSIKSTKTTNTTHLSPQSESTAATTTVNTTAAAHSLNSGRFSQAHQESDFPDPRSRKITGSGPESDISADNNLFFPLRNDIFPCTACGEVFQKPNLLEQHQTIKHALSELSGSDPGHNIVQIIFKSGWPENSNPPNITRILKINNSTKILSKFEEYREIVKAKAARAITRRRDERCIADGNELMRFHCSTFLCELGLNGDSKICSQQFCNICGIIKSGFSSKLDGISTMSSSWKAHMSIPEEVEQEFHFMNVKRAMLVCRVIAGWVGSVSDEVDKQNGEFDSLMARGGCGVHTRLDEEELLVFNPRAVLPCFVIVYVWEAPLSF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0713 395 SUPERFAMILY ADP-ribosylation 178 388 - -
Lal3g0713 395 ProSitePatterns Zinc finger C2H2 type domain signature. 155 176 IPR013087 -
Lal3g0713 395 MobiDBLite consensus disorder prediction 79 136 - -
Lal3g0713 395 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 387 - -
Lal3g0713 395 MobiDBLite consensus disorder prediction 79 116 - -
Lal3g0713 395 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 181 IPR013087 -
Lal3g0713 395 MobiDBLite consensus disorder prediction 38 57 - -
Lal3g0713 395 Gene3D - 176 388 - -
Lal3g0713 395 PANTHER NUCLEIC ACID BINDING PROTEIN 3 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0713 Lal-Chr3 5862427 5864436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0713 65 387 C2H2 Transcription Factor Family AT2G29660 51.488 1.24e-99 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal3g0713 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0713 - - gmx:100785244 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0713 3 5862427 5864436 Lal3g0713 3 5862427 5864436 ECH