Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0710 ATGGAAGGTAGAATAATAAGTAGTGGTGGATATGTTGCAATTCCAATTCATGGGAGTGAAAATATTAAGGCTATAAACCCTTCTATGTTTAGGTCAGGTTCTTCTTTAACAGCCATAGACAGGTTCTTATGGACTCAACAAAGCCACTTTCCACAGAAGCAACAACAACAGCCTCATGTTAATGTTGCAAAGAACACTCATGCAAGTGCTTTTGATGATGAATTCTATAGGCTTACTTGCTCTGTTGGTGGTTCAACCTATAGGTTTGTGTGGCCTAATTACACTCAAGAAGGGAGCTTCTATGATGAATTCATAGCAAATGAAGATTTGAATTGGTCACACCAGTTTCCTACATTGTGTCAAAATGAAGATGTTAAAGTTTTAGGGAAGAATGTGAAAATGGTGGGAAGAAGGCCTAAGAAAGGGTCATATGTGTCTTTGATCAAAGGACAGTGGTCTGAAGAAGAAGATAGGAAATTGTTGAAGTTAGTGAAGCAATATGGTGTTACAAAATGGTCTCAAATAGCTGAAAAGTTGGAGGGAAGGGCTGGTAAACAGTGTAGAGAAAGATGGAATAATCACCTAAGGCCTAATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGAATCTTAGTAGAAACCCACTCAAAAATTGGAAATAGATGGGCAGAAATAGCAAAATGCATTCCTGGAAGAACTGAAAATGCCATAAAGAATCATTGGAATGCCACTAAAAGGAGACAGAATTCAAAGAGAAAGAACAAAAGGCCAACAACCTCAAATGGCAAGCCTCAACCAACAATTCTTCAAGACTATATCAAACACAAAACTCTTACCACATCAACAACTACCATTCCTTCTAGCTTTACCACAGAAATCTCACAGAACCTTGCAGCTGAAGCATCAACAAGCCAATTAAGTCTCTTGTTATCTCAACCTTCTGAATCTATTACCACTCAAAATGGCACTTCATCACCACCACTTATAGATGAGTTAAATGATTATGAGTTACTCTTCATGCAAGAACTTTTCAATGTTAATGTTGCTGAAAGTGTTAACCACTCCAAGAATGTGGGTTATAGCCAAACTAATAATGGTAATCAGCTTCTTACTGATGTTACTGAGTGTGGGTTTTTCTGTTCCAATACAAAGCCAAACAACATGTTCTTTGATGAGAGTCTCATCATTTCTAGAAAGACTACAACTCCCAACAATTACCTTGATCTCTATCTCTCACACTTGTTGAATGGAGCTGCAAGTTCATCTTCATCATCACTTTGCTGTGATTATGGGAATCAAAATCTGAACACTGATTTGAAGCTGGGAGACGATCAAGATTTTTCAGAAGAAAATAAGAAGGAGATGGATTTGGTAGAGATGGTTTGCTCCACAAGTTTTCCCACTAGCAGCTTCTGA 1419 0.377 MEGRIISSGGYVAIPIHGSENIKAINPSMFRSGSSLTAIDRFLWTQQSHFPQKQQQQPHVNVAKNTHASAFDDEFYRLTCSVGGSTYRFVWPNYTQEGSFYDEFIANEDLNWSHQFPTLCQNEDVKVLGKNVKMVGRRPKKGSYVSLIKGQWSEEEDRKLLKLVKQYGVTKWSQIAEKLEGRAGKQCRERWNNHLRPNIKKDSWSEEEERILVETHSKIGNRWAEIAKCIPGRTENAIKNHWNATKRRQNSKRKNKRPTTSNGKPQPTILQDYIKHKTLTTSTTTIPSSFTTEISQNLAAEASTSQLSLLLSQPSESITTQNGTSSPPLIDELNDYELLFMQELFNVNVAESVNHSKNVGYSQTNNGNQLLTDVTECGFFCSNTKPNNMFFDESLIISRKTTTPNNYLDLYLSHLLNGAASSSSSSLCCDYGNQNLNTDLKLGDDQDFSEENKKEMDLVEMVCSTSFPTSSF 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0710 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 146 199 IPR017930 -
Lal3g0710 472 Gene3D - 202 269 - -
Lal3g0710 472 PANTHER MYB PROTEIN-RELATED 50 436 - -
Lal3g0710 472 MobiDBLite consensus disorder prediction 237 270 - -
Lal3g0710 472 SMART sant 148 197 IPR001005 -
Lal3g0710 472 SMART sant 200 248 IPR001005 -
Lal3g0710 472 ProSiteProfiles Myb-like domain profile. 196 246 IPR001005 -
Lal3g0710 472 CDD SANT 203 246 IPR001005 -
Lal3g0710 472 PANTHER MYB TRANSCRIPTION FACTOR 50 436 - -
Lal3g0710 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 250 IPR017930 -
Lal3g0710 472 ProSiteProfiles Myb-like domain profile. 149 195 IPR001005 -
Lal3g0710 472 CDD SANT 152 195 IPR001005 -
Lal3g0710 472 SUPERFAMILY Homeodomain-like 146 242 IPR009057 -
Lal3g0710 472 Pfam Myb-like DNA-binding domain 152 209 - -
Lal3g0710 472 Gene3D - 148 200 - -
Lal3g0710 472 MobiDBLite consensus disorder prediction 245 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0710 Lal-Chr3 5837123 5839535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0710 140 465 MYB Transcription Factor Family AT5G58850 43.228 1.71e-78 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal3g0710 Myb_DNA-bind_6 1.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0710 K09422 - gmx:100786295 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0710 3 5837123 5839535 Lal3g0710 3 5837123 5839535 ECH