Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0700 ATGTGCACCGGTTCAAATGGTTTACACCGCAGAATTTCTACTTTGCTCGAGTTTTCAGCCGCGGATGATGTGAAGAGTTTCAAAGAAGCAGTTGAAGAAGAGGGTCATGATGTTAATGAGGTGGGGTTATGGTATGGAAGGAGGGTTGGTTCAAAGGAAATTGGTTATGAAGAGAGGACCCCTCTTATGATTGCTGCTATGTTTGGAAGCAAAGGTGTGTTATCTTATATTCTTCGAACCGGTGTTGCCGATGTTAACAAGGCTTGTGGTTCAGATAGGGCCACTGCCCTTCATTGTGCTATTGCTGGGGGTTCTGCTGCCTCCCCTGTGGTTATCAGGCTTTTGCTTGATGCATCTGCAGATGTTAGTGTTGTTGATGCTAACGGGAACCGATCCTATGACCTGATCGACATTGTCTTCAACAGTGTCTTCAATTCAAGGAAGAAGATATTAGAAGCTGTTCTCGAAGGTAGAGACGGTGTTGATGAGGCTGGCTTTAGATTTGTGGAAGCAGATGGCCAAATGGTTAGACAGCAACAGCAATATACGGATTCACCTCGTGTTTCAAAGGACGGGACTGAAAAGAAAGATTATCATGTTGATCTCTCTCTTCCAGACATAAAGGATGGGATATATAGCACGGATGAGTTTAGGATGTACACATTCAAAGTGAAGCCTTGTTCAAGGGCCTATTCTCATGATTGGACTGAATGCCCCTTTGTTCATCCATGTGAAAATGCAAGGCGACGTGATCCTATGAAATATCAATACAGCTGTGTCCCTTGCCCCGAGTTCCGGAAGGGATTGTGTAGCAAAGGGGATGCATGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCTGCGCAGTATCGAACACGACTTTGCAAGGATGAGAGTGGATGCACCAGAAGAGTTTGCTTTTTTGCTCACAAGTTGGAGGAGCTTCGCCCCTTGTATGCGTCTACTGGTTCTGCATTGCCTTCTCCCCAATCATATCCAGCTAGTGCTTCTTCATTGGATATGGGTTTGGATAGCCGTTTATCGCTAGGGTCTTCATCTGTCTTGACACCACCTGCCTCAGCACCACCTTTGACTCCATCGGGAGCATCTTCTGCTGCGGGCGGAGCCATGTGGCAGTCCCCTACTCTTCAGCTTGCCGGACGCAGGTTGAAAACTGCATTAAATGCTAGAGACTTTGATTTAGACATGGAATTGTTTGGACATGAAAATCGTCAGCAGATGCTATTGTTAGATGAGTTGGCTGGTTTTTCGCCCCCTTCGAAATGGAAAAGTAGCATGCTGAATAGTCCATCTTTCCCTGTCTCTTTGGGTGATGATGCCGGGGACTTAAATAGGCTTGGAGGAGTTAAGCCTACTAACCTTGAAGACATTTTCGGGTCTCAGTTACAATCTCCAACCGGAATCCAGGCGCATCAGAATGTGAACAAGCAATTGAGGGGCTATTCTTCAAGTCTCTCCACTTCAAATGTGATTGGATCACCATCATTTATGGTTGATCTATCTGGCTCTCCTGCCACATTGTCTTTGAATTCAAGAAATGCTGCCCTTTCAAAGCAAAGCCAGAGCTTTATTGAGCGTTGTTGTGTCGCGAACCATAATTCCGAGTTTTCTTCACCACTGGAGCCTTCAATCTTCTCCGGATGGGGCTCCCCTGATGGAAAATTAGACTGGGGCATCCGTGGGGAAGAGCTGAATAACCTGCGAAAATCTGCTTCCTTCGGATTTCGAGCAACCGGTAGTCCTTTAACAAAGGCTGCAACCACAGCGCCACGGAATGTTGATGAACCAGATGTATCTTGGGTTCATTCACTAGTGAAGGATGCTCCACCAGTTGAATCTGGTCAATATAGTGTTGAAGAGCCGCGACAGCAGCCGCAACACTATCTTAACAACGGAACAGATGTCGTTCCGGCTTGGCTGGAACAGCTGTACATGGAGCAGGAGCAGGAGCAGATGGTGGCTTGA 1992 0.4669 MCTGSNGLHRRISTLLEFSAADDVKSFKEAVEEEGHDVNEVGLWYGRRVGSKEIGYEERTPLMIAAMFGSKGVLSYILRTGVADVNKACGSDRATALHCAIAGGSAASPVVIRLLLDASADVSVVDANGNRSYDLIDIVFNSVFNSRKKILEAVLEGRDGVDEAGFRFVEADGQMVRQQQQYTDSPRVSKDGTEKKDYHVDLSLPDIKDGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPCENARRRDPMKYQYSCVPCPEFRKGLCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKLEELRPLYASTGSALPSPQSYPASASSLDMGLDSRLSLGSSSVLTPPASAPPLTPSGASSAAGGAMWQSPTLQLAGRRLKTALNARDFDLDMELFGHENRQQMLLLDELAGFSPPSKWKSSMLNSPSFPVSLGDDAGDLNRLGGVKPTNLEDIFGSQLQSPTGIQAHQNVNKQLRGYSSSLSTSNVIGSPSFMVDLSGSPATLSLNSRNAALSKQSQSFIERCCVANHNSEFSSPLEPSIFSGWGSPDGKLDWGIRGEELNNLRKSASFGFRATGSPLTKAATTAPRNVDEPDVSWVHSLVKDAPPVESGQYSVEEPRQQPQHYLNNGTDVVPAWLEQLYMEQEQEQMVA 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0700 663 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 7 658 - -
Lal3g0700 663 SUPERFAMILY Ankyrin repeat 17 135 IPR036770 -
Lal3g0700 663 Gene3D - 256 319 - -
Lal3g0700 663 MobiDBLite consensus disorder prediction 620 639 - -
Lal3g0700 663 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Lal3g0700 663 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lal3g0700 663 SMART ANK_2a 92 124 IPR002110 GO:0005515
Lal3g0700 663 ProSiteProfiles Zinc finger C3H1-type profile. 256 283 IPR000571 GO:0046872
Lal3g0700 663 Gene3D - 9 153 IPR036770 -
Lal3g0700 663 PANTHER UNKEMPT FAMILY MEMBER 7 658 IPR045234 -
Lal3g0700 663 Pfam Ankyrin repeats (3 copies) 35 125 IPR002110 GO:0005515
Lal3g0700 663 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lal3g0700 663 SMART c3hfinal6 256 282 IPR000571 GO:0046872
Lal3g0700 663 SMART c3hfinal6 291 314 IPR000571 GO:0046872
Lal3g0700 663 MobiDBLite consensus disorder prediction 356 377 - -
Lal3g0700 663 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 281 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0700 Lal-Chr3 5658702 5660693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0700 12 656 C2H2 Transcription Factor Family AT5G12850 38.256 1.59e-134 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal3g0700 Ank 0.023 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0700 3 5658702 5660693 Lal3g0700 3 5658702 5660693 ECH