Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0695 ATGGCGGTGAAGAATTCTCGAAGCAAAAAGCGCAAAAGGGGTCATGTCGATGAAAGCAAAAAATCAAAACTTCTTCTCAATGAACGGGTCGAGGTGAGGAGTGAGGAGGACGGTTTTTTGGGCTCATGGCACCCGGGGAGAGTTATAAAGTTTGATAAGCTGAAGTGGCATGTCAGATATGATAATATTTTAGATGATGATGGAATGGATTATGTGGAAGTAGTCAATGTTTCTGGTGGTTTGGATGGTGATAGTGATTCTTCATATGTCTACACTCGCGGGTTGATTAGGCCACCACCTCCTATGATTTCATTTGAGGGATGTGAACTTCAGTTTGGTCTGTGTGTTGATGCGAATCATGAGGAAGCTTGGTGGGAAGGTGTTATATTTGATCACCGTGATGGAATGGAGGAGAGGAGAGTGTTTTTCCCAGATTTGGGTGATGAAATGACTATTGGAATTCATCAATTGCGGATTACTCAGGATTGGGATGAACTTACTCAGGTGTGGGAGCGACGAGGGAAGTGGGTTTTTCTTGAATTGATTGAGGAGTTTCACACGGTATCACTTGTTGCAGTTTCAGCAAAGCAAATTTGGTATGATTTACGGACAAAAAAGGACTTTGACATGATTAGGGAGTGGACTTTGAATGTGAAGTTTTTATGGAGAGACCCGGTAATGAAGGTAATTAGAGACTACTTGACTATTACACTTGAAGAAGTCTTGTCACGAATAGACCTACCAAGGGCTTTACTGAAAGAAACACCAGAGCTGGAGTCAGTTGAACCTACTCCTAATCCTGACTCCAATTGGGAAGTTGATCAGGCCAACCATCTGGCTGTTGTAAATTCTGGCAGCCAATTCAGTGGCAATACAAATTTTAATTGCATCGGTAGTCCTGATAATGCATTTGATTCTGACCTCGGAAAAGGTGACATCCCTCTGAAAAAAGGCGACTCATTAAATTTGTCAGATACTGTTCAAAACTATGAGAAATGTGATATTGATCCTTTGGTGGGTGGGGAATCAGATATGCATCTTATGGCAGACTCTCATATGACCTTTACTGGAAAGAAAATTTTGGTGCAGGAAGAACCTATTCCTCCTGTTCAAGATGTCTTACCTGAGTTGGAGAAAGAAGTTTCCTGTCATGATGCTGGTGAAGTAGTTGCAGGTGCTAGTTCTGAAAAAAAAGGAGAAAGTGGATGCTCAAGTTGTTCAGGATCAAATTGGAATCCTCTGATACTGTCTGAAGTTCAATTTTGTCCTAATGCTGTTACGGATTATGCACTTGGAGTTCATCGTTCTAAGGCGAGGGAAGAAGTACTGAAACATCTTGCATATCTTGGATGGGAAATTGAGTGGACATCACGTTACGATGCTAACCAATACAGGTACAGATACAAGTCACCTGATAAAAATGGCCAGAAGATTTATTATTCACTTATTACAGTTTGTAATATGCTAATGGATTCCATGCTGTCCCAAAAGGATCAAAGTATGAAGCATTCTACAGATGACAGCCATCTTTCACATGTTCTTAATCAATCGCAAAAGATGCAGGATATAGACATTCTTACACCGATTGTGCCACCTCTTGTGGAAGATACATATGAATGTGAATTTTGCCCTGAAGCTGTTGTGGAATATTACTCACATGCATCTAAGATGGACATGGCTGATAAAAGAAAGTTGATACTGAAAGCAAGGAAGCATCTGTTAGCAGTAGGATGGATCCTTACGGATCCACCTCCTAATAATAGAAGAAGGGGGGTGTTGTATACATCTCCAGAAAACCGGAGATTCCATTCACTCCACACTGCATGCGGTTTTTATATCCAAGAAAGTAATCCTAACATGACAATTTCTCGAAAGCAGAAGCGGAAATGCTTGAAGAATTCGAAGTCCAACCTACTTAAGTTTCAAAGCAATGGACTACCTCTAAGGGTGCTGCGGTCAAGTAAAACTGTGCAACAGGTGTCTACCCCTTGTCCATCTCACTATAAACCTCAAAATGTTCTGTCTTGGTTGATAGACAGCAACATGGTGTTACCAAGGTCTAAAGTTTATTACCAGACGAAAGGTAGGAACCGGGCTTTGTCTGAAGGCCGAATAAGTCGTGATGGAATCAGGTGTAGCTGTTGTCAAACAGTACATACTCTTGCCGGCTTTGAAAAACATGTTAGCAGCATTCGTACCAGCAGACCCGCTGCTAGTATCCATTTGGAAGATGGTAGGTCACTCTTAGATTGCCAAATACAAATAATGCAAGATCACAAGACAAGGGAAAGTATGGAAAAACCATGCAATGATTTATGTCAAAATGAGAATGATTATCTTTGTTCTGTTTGCCACTATGGTGGTGAACTTATTTTATGTGATCAATGCCCATCTTCATTTCATAAGACGTGTCTTGGTTTGGAGGATATCCCTGATGGTGATTGGTTTTGTCCATCATGTCGATGTGGGCTGTGTGGCCAAAGCAAAATTGATGGTGCTGAGGATGGACATTTCCTTACTTGCATTCAATGTGAACACAAATATCATGTTAGGTGCCTGAGGAATAGAGATTTATGTAAATCGAGAGGAGATTTGGAAAATTGGTTCTGTGGAAAAGACTGTGAAAAGATATGTGCAGCCTTGCATAAACTATTAGGAGAGCCAGTTTCAGTGGGTGTGGGAAATCTAACTTGGACATTGGTGAAGTCTATCACCTCCGGGAGTTGTGATCTCGATAGCACTGAAAATGAGCCATTGGCAGAAAATTTTAGCAAACTCAATGTTGCGCTATCAGTGATGCATGAATGTTTTGAGCCCTTAAAGGAACCTTTCTCCAGCAGAGATCTTATGGAAGATGTTATATTTAGCAGATGGTCAAAGCTTAATCGATTAAATTTCAAGGGTTTCTATAATGTTCTTCTGGAGAGAAATGATGAACTGATTAGTGTGGCAACTGTTAGGGTCCATGGAAGGAAAGTGGCAGAAGTACCTCTTGTTGGTACCAGATTTCAGTACCGTCGACATGGAATGTGTCGCATTTTAATGAATGAGCTCGAAAAGAGGCTCATGCAATTAGGAGTGGAAAGACTAGTTTTGCCTGCTGTTCCTAGTGTGCTAGAAACATGGACAGGTTCTTTTGGCTTTGTAAAGATGACAAATTTAGAGAGGTCAGAATTTCTGGACTACACGTTCTTAGATTTTCAGGGTACCATGATGTGCCATAAGCTTTTGATGAAGGTACCATCTCCAGATTCAGTTTTGTCAACAGAGTCCCAAGAAAGACCACATTATGCTTACTCTGGACGTTGTATTATTAACTTCGGTAATTCCAGTCCAGTATCTGAATTATATCAAGCTGAAGAGATTGAGAAAAGAGGGACACTGTACCTTCAAATGGGCAATGATATTTGTGCAGGCAAAAATGATCACCTTGGTAGTGATGCTTGTGACCAGGTTACCATGGAGAAGCAACCAAGTCAGGAGGAACAACAGTGCCAGAACGGAACCAGTCCCAATTGGTCACTTGTAAAAGAAGATAACAGGTTTAGTGGCTCATTTAAGTTTTACACTCGAAGAAGAGTCAGAAAGGCACATGAGTAG 3600 0.4103 MAVKNSRSKKRKRGHVDESKKSKLLLNERVEVRSEEDGFLGSWHPGRVIKFDKLKWHVRYDNILDDDGMDYVEVVNVSGGLDGDSDSSYVYTRGLIRPPPPMISFEGCELQFGLCVDANHEEAWWEGVIFDHRDGMEERRVFFPDLGDEMTIGIHQLRITQDWDELTQVWERRGKWVFLELIEEFHTVSLVAVSAKQIWYDLRTKKDFDMIREWTLNVKFLWRDPVMKVIRDYLTITLEEVLSRIDLPRALLKETPELESVEPTPNPDSNWEVDQANHLAVVNSGSQFSGNTNFNCIGSPDNAFDSDLGKGDIPLKKGDSLNLSDTVQNYEKCDIDPLVGGESDMHLMADSHMTFTGKKILVQEEPIPPVQDVLPELEKEVSCHDAGEVVAGASSEKKGESGCSSCSGSNWNPLILSEVQFCPNAVTDYALGVHRSKAREEVLKHLAYLGWEIEWTSRYDANQYRYRYKSPDKNGQKIYYSLITVCNMLMDSMLSQKDQSMKHSTDDSHLSHVLNQSQKMQDIDILTPIVPPLVEDTYECEFCPEAVVEYYSHASKMDMADKRKLILKARKHLLAVGWILTDPPPNNRRRGVLYTSPENRRFHSLHTACGFYIQESNPNMTISRKQKRKCLKNSKSNLLKFQSNGLPLRVLRSSKTVQQVSTPCPSHYKPQNVLSWLIDSNMVLPRSKVYYQTKGRNRALSEGRISRDGIRCSCCQTVHTLAGFEKHVSSIRTSRPAASIHLEDGRSLLDCQIQIMQDHKTRESMEKPCNDLCQNENDYLCSVCHYGGELILCDQCPSSFHKTCLGLEDIPDGDWFCPSCRCGLCGQSKIDGAEDGHFLTCIQCEHKYHVRCLRNRDLCKSRGDLENWFCGKDCEKICAALHKLLGEPVSVGVGNLTWTLVKSITSGSCDLDSTENEPLAENFSKLNVALSVMHECFEPLKEPFSSRDLMEDVIFSRWSKLNRLNFKGFYNVLLERNDELISVATVRVHGRKVAEVPLVGTRFQYRRHGMCRILMNELEKRLMQLGVERLVLPAVPSVLETWTGSFGFVKMTNLERSEFLDYTFLDFQGTMMCHKLLMKVPSPDSVLSTESQERPHYAYSGRCIINFGNSSPVSELYQAEEIEKRGTLYLQMGNDICAGKNDHLGSDACDQVTMEKQPSQEEQQCQNGTSPNWSLVKEDNRFSGSFKFYTRRRVRKAHE 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0695 1199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 771 822 IPR013083 -
Lal3g0695 1199 Gene3D - 935 1059 - -
Lal3g0695 1199 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 914 1083 IPR000182 GO:0016407
Lal3g0695 1199 SUPERFAMILY FYVE/PHD zinc finger 775 826 IPR011011 -
Lal3g0695 1199 MobiDBLite consensus disorder prediction 1 20 - -
Lal3g0695 1199 Pfam Tify domain binding domain 703 754 IPR032308 -
Lal3g0695 1199 SMART agenet_At_2 22 104 IPR014002 -
Lal3g0695 1199 SMART agenet_At_2 108 165 IPR014002 -
Lal3g0695 1199 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 7 622 - -
Lal3g0695 1199 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 624 1132 - -
Lal3g0695 1199 CDD PHD2_CHD_II 781 820 - -
Lal3g0695 1199 Pfam Agenet domain 28 101 IPR008395 -
Lal3g0695 1199 Pfam PHD-finger 781 822 IPR019787 -
Lal3g0695 1199 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 954 1057 IPR016181 -
Lal3g0695 1199 PANTHER PHD ZINC FINGER PROTEIN 7 622 - -
Lal3g0695 1199 PANTHER PHD ZINC FINGER PROTEIN 624 1132 - -
Lal3g0695 1199 SMART PHD_3 780 821 IPR001965 -
Lal3g0695 1199 SMART PHD_3 822 875 IPR001965 -
Lal3g0695 1199 MobiDBLite consensus disorder prediction 1 17 - -
Lal3g0695 1199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 823 877 IPR013083 -
Lal3g0695 1199 CDD NAT_SF 972 1032 - -
Lal3g0695 1199 ProSiteProfiles Zinc finger PHD-type profile. 778 823 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0695 Lal-Chr3 5584807 5594146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0695 24 249 PHD Transcription Factor Family AT5G58610 47.186 2.42e-57 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal3g0695 Agenet 1.9e-13 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0695 - - lang:109350262 2234.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0695 3 5584807 5594146 Lal3g0695 3 5584807 5594146 ECH
Lal3g0695 3 5584807 5594146 Lal22g0353 22 2270097 2276185 PCT
Lal22g0353 22 2270097 2276185 Lal3g0695 3 5584807 5594146 PCT