Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0687 ATGAACTCACTAAGTCAAATGATTCAGAACATATTCTCAGACAACAGCAACATCATGCTTGCAGCTATCATTTCCTTGCTCCTAGTCATACTCTTTGTCCTTCTCCTCCATCTCTATGCCAAGTGGTTCTTGTTTCAGGCTCAGGTTCAAGCACGTGCCCGTCGCCGCCGCCGCCGCCATCACCGCATAACCACTGTGACTGTCTCCGACGTCTTTGGCCCTGCAAGGTTCCACCACTTCCACAGCTTCAACATACAAGACTCACCCCTCTCAAGTTCCCACACAAAAGGCCTTGATTCTTCTATTATTTCTGCTATTCCAATGTTCATGTACAAAGCTTCAGAAGCACAAGAACAAGGTGATGATTATTATGATGATGCTGGTGATAACAAGGTTGAACAAGAGCTAGAATGTGTTATTTGTTTGAGTGCTTTTGAGGATGGTGAGATGGGTAAGTGTTTACCAAAGTGTGGACATGGTTTTCATGTTGAATGCATTGACATGTGGTTGAGTTCACATTCCAATTGTCCAATTTGTAGAGCTCCTATTGTGGCTTTGGTTGGTGATGATTCTTCTGCTTTGGTTGAGATTGTGGTTGATGATGCTATTGCTACTCCAAGTTCTCATGAGATTAGAGATAATGATGATGTAGGAGTGAGTGAATCTGTGTCAGAAGCTTCACTTTTTTTGTTTCGGTTCTCTTTGAAGAGAATCCTGAGCAAAGTTTTCCATTCTTCCTATATAAATGAATTACAATTTTGA 762 0.4186 MNSLSQMIQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLFQAQVQARARRRRRRHHRITTVTVSDVFGPARFHHFHSFNIQDSPLSSSHTKGLDSSIISAIPMFMYKASEAQEQGDDYYDDAGDNKVEQELECVICLSAFEDGEMGKCLPKCGHGFHVECIDMWLSSHSNCPICRAPIVALVGDDSSALVEIVVDDAIATPSSHEIRDNDDVGVSESVSEASLFLFRFSLKRILSKVFHSSYINELQF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0687 253 CDD RING-H2_EL5_like 137 180 - -
Lal3g0687 253 Pfam Ring finger domain 137 180 IPR001841 -
Lal3g0687 253 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 246 IPR044675 -
Lal3g0687 253 PANTHER - 2 246 - -
Lal3g0687 253 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Lal3g0687 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 185 IPR013083 -
Lal3g0687 253 SMART ring_2 138 179 IPR001841 -
Lal3g0687 253 SUPERFAMILY RING/U-box 130 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0687 Lal-Chr3 5490683 5491444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0687 10 193 Rapid Response to Elicitors AT3G16720 33.152 2.51e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0687 - - lang:109329145 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0687 3 5490683 5491444 Lal3g0687 3 5490683 5491444 ECH
Lal5g0968 5 11845751 11846449 Lal3g0687 3 5490683 5491444 LSH
Lal3g0687 3 5490683 5491444 Lal18g1247 18 15151932 15155090 PCT
Lal3g0687 3 5490683 5491444 Lal22g0105 22 645226 650302 PCT
Lal18g1247 18 15151932 15155090 Lal3g0687 3 5490683 5491444 PCT
Lal22g0105 22 645226 650302 Lal3g0687 3 5490683 5491444 PCT