Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0616 ATGTCTGGAGATTCTTCGTGTAGTTTGAAGTTGTCGGACGGTTCTCTTCTATTGGGAAGGTTCATGGTCTTGTCAACTTCCTTTCTTCATGAAGATGGTCCCTTTTTATCGAGAAAGAGGCTGACAGTATCAGATCTTCCACATAAAGATATAGATTTACACGCAGATGCTGGAATTTGCAGTGATATTTCCTTACACTTGCCGCAAAATATAAAAAGGAGTACTGGTGATATCCCCTCTTGCTGCAATATTTATGATAAAGTTTATCCAGATTCTGGAATGGAGATGAAATTTCCATCAAATGTTAATAATGGCAATATTCCTGTCTGGTCTGCCACGGGGAATGTTTCACATGTGGACCAGAGTTTCTGTGGCTATATGCAACATCCTGCTTTTGTGAGTGGATGGATGTATGTAAATGAACATCAGCAAATGTGCGGTCCCTATATTAAGGAGCAATTATATGAGGGCCTAACTACTGGTTTCTTGCCACACGAGCTTCTTGTGTATCCTTTGATTAATGGCGCATTAATGAACCCTGTGCCATTGAATTATTTCAAGCAGTTTCCTGACCATGTTTCCACTGGCTTTGCATATCTGAGTCTAGGCACCGCAGGCACAAGTATGCCTTCTAATTGCTCCTCCTCGTTTTGTAAGGATATGACAGTTTATGGGCATGATAGATCCTCTGGTCAATGTGCTCCTCTGGATGTGAAGTCTGATTTACAGTCACATATTAGTTACCGCCTGAATGAATCCAAACACCTAAGTTCAAACTCAGAGGCAGTCATCAGTATGATATCTTCTCAGATGTTAGGTGAAGAATCATGTTGGCTTTATGAGGATGAAAATGGCGTGAAACATGGGCCGCATTCTATTTCAGAATTTATTTCCTGGCACCGTCATGGATATCTTAAAGATTCATCTATGATCTCTCATTCGGACAATAAGTGTGCCCCCTTTATGCTACTATCTGTTGTAAATGCATTTGAAGGAGAGATGTCTGGAACCATATGTAGGCCAGGTTCCAAAAATAATGAGGTTGGTGGTAGGGTAAATATAATTTGTGAAATTTCTGAGAGCATCTCTTCCGAATTGCACTTGGGTGTCATGAAAGCTGCCCGCAGAGTTCTGCTAGATGGGATTATCGGCGATATCATTGCAGAATTTGTTACGGAAAAGAAACATAAGAAGCATAAGCTTGAATCATCTGAACAGGCTTCTGAGACTTGCATGTTGGATAGCAAAAAGTCCAAATTTGCCTTGGAGATCAGTAAAGGTACTGGCATTCCAAGTAAGCTTGCATCTTCCCATATTTTAGCTGATCAGACTTGCCATGAAATTTCCAGACTATCTTCAACAACCATTAAATCAGTTGGAGGCATTGAAAACTTTTGGTGGTCATATGCTGTTGTTCGTAAAGTACTTTTTGATTATTGCATGCAAGTCATGTGGAATGCAGTGTTTTTTGACACTCTTGCTGACTACTTATTTTCCTGGAGGAAGAGGAAGCTTTGGTCTAATCCTAAGCCTCAACTTGTTAATGGTTGTGGAGATTATGTTGAAAGGATTAAATCACTAGCTTTGCTTCTCAGGTCAGGTTCCTCTGAGTACAATGCTGATGGCTGTGATCAGTTTGGAGTGCTTTCAACTGAAAGAGATTATCATGCTCAATCATATTTACCTTGTACTGGAGTCAAAGGCAGATACTTGCTAGAAGGTCATAGAGTTTCACACACTCATCATGACTCTAAAGATTTGTCATGCATTATTGAAAGTGTGGAGAATGAACTTCACAGCTCGTCAATGGCGTCTTTAGCGGAATACATTCAAAGTTTTGTTGAAAAGGAAGTGAACAATTTAATTCACTCCCCAGGAAAAAAATTGAGCGAGGTTGCTGTTAGTGACTGTGGTTTTTCAGATGTACTTACTGATAAGACATATGTGAAGGAAATTCTAGATGACCATCCTGTGGTTCTTACAAAAGAAAGGGATTCATTTTGCGAGTCTTCATCTAAAAACCCTATGTCAGATGTATTTGCGAATGCATTTAAGGAGTTGTGCGGATCTGTAGATGATATTGTTGATGAAGAGGAGATTGGCGACTTACCACCTGGATTTGAAGAGAACTTTGAAACAAGTTTGCCACATTTTAATTCTAAATTTCGACCTTCAAGTTTAGTCGAATGTATTCCTAAGATAACAAAATATGTTGCAACTGCACTGTGCCGACAGAAGTTGCACGATGAAGTTATAGATGAGTGGAAGTCATCGTTTCTCGACTCTGCATTGAATAAAGTTTTTATATCGTGTACCGTGAAGAAAAATTTTCAGTATAATGGTCATGAGAAAGGGAAAGCATTCAATGCGAACAAAGGATATTTGAATGATTCCACTTCTAGACTGGGAAGAACGATGGAAGGAGCGAAAATTTCTTCTGGAGTTCCTTTGGTGAGTGGAAGGCATACATATTACCGCAAAAAAATGGTGCGGAAAGAATTGTGTTCCTCTCCATCTGTATCATTAGATGATTCTGGTCCAGGGGAGCAGCATGTGGCTAAGTTAAGGAAACATGCTTCTGCTGTTTTGGAGACTGCAGAAGTTAAAATAACCTCTACTAATAGTGGAAAGACAAGGATGATTAGAAGGAAGAAGGATTTATTTGATGAGGGCAGGTCTTCTCCTGTCAACGGTACCTTGCACAGTGACCAATCATCGTTGAAGAATAAATCTAGTCGAAAAGTATTGAAGTCTTCGTGCACAGTTCAAAATGATGTTTTGGATGTCATAAAATCTAATGAAAAGAGGCTTTCAACATCAATAGATAATAGTGTGGGCATGAGGAAGGGGGTTAGAAGCGGCTGTGAAGGCACCATTCAAGGGAAGACCACTGGTCATAGCTCTAGACAGGTGCTAAATGCTAAAAGTACAGTATCAAAATCTAAAAGGAAGCATCTATTGGAAATGGATGATATGCCATCTTTACAGCCTGGGAAGGTATTGAAAATTTCAAATGGTCCGAAGCAGGGGGCTAGCAAACAGGTTACTACGGCAAGGAAGAATTCTGCTAAATCCAAGCCTTTGGATTTGTGTCCAAGATCAGATGGATGTGCTAGGACTTCTATTGATGGGTGGGAATGGCATAAATGGTCTCAAAAAGCTACTCCTGCATATAGAGCACGTGTCAGGGGCCTTCCATGTATGCAGAACAATTTCACAGATTCTGATAATAATGTTACTCAATTGTCAAATGGTAAAGGTCTTTCTGCAAGAACAAATAGGGTAAAGTTGCGCAGTCTTCTTGCTTTCGCAGATGGTGATCTTTTGAAAGTGCCTCAATTGAAGGCAAGGAAAAAAAATTTATGTTTTCAAAGGAGCAAGATACATGACTGGGGTCTTGTTGCCTTGGAGCCAATAGAGGCAGAGGACTTTGTGATTGAATATATTGGAGAATTAATCCGTCCTCGGATATCTGATATACGTGAACGTCAGTATGAAAAGATGGGAATTGGAGGCAGTTATCTCTTTAGAATTGATGATGATTATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCATTCCTGTGAGCCCAACTGCTACACAAAAGTTATATCTTTTGAGGGTCAAAAGAAGATTTTCATTTATGCGAAGCGCCATATAGCTTCTGGCGAAGAAATTACATACAATTATAAGTTCCCCTTGGAAGAGAAAAAGATTACCTGCAACTGTGGTTCCAGAAAGCAAGACAACCAATAA 3771 0.3975 MSGDSSCSLKLSDGSLLLGRFMVLSTSFLHEDGPFLSRKRLTVSDLPHKDIDLHADAGICSDISLHLPQNIKRSTGDIPSCCNIYDKVYPDSGMEMKFPSNVNNGNIPVWSATGNVSHVDQSFCGYMQHPAFVSGWMYVNEHQQMCGPYIKEQLYEGLTTGFLPHELLVYPLINGALMNPVPLNYFKQFPDHVSTGFAYLSLGTAGTSMPSNCSSSFCKDMTVYGHDRSSGQCAPLDVKSDLQSHISYRLNESKHLSSNSEAVISMISSQMLGEESCWLYEDENGVKHGPHSISEFISWHRHGYLKDSSMISHSDNKCAPFMLLSVVNAFEGEMSGTICRPGSKNNEVGGRVNIICEISESISSELHLGVMKAARRVLLDGIIGDIIAEFVTEKKHKKHKLESSEQASETCMLDSKKSKFALEISKGTGIPSKLASSHILADQTCHEISRLSSTTIKSVGGIENFWWSYAVVRKVLFDYCMQVMWNAVFFDTLADYLFSWRKRKLWSNPKPQLVNGCGDYVERIKSLALLLRSGSSEYNADGCDQFGVLSTERDYHAQSYLPCTGVKGRYLLEGHRVSHTHHDSKDLSCIIESVENELHSSSMASLAEYIQSFVEKEVNNLIHSPGKKLSEVAVSDCGFSDVLTDKTYVKEILDDHPVVLTKERDSFCESSSKNPMSDVFANAFKELCGSVDDIVDEEEIGDLPPGFEENFETSLPHFNSKFRPSSLVECIPKITKYVATALCRQKLHDEVIDEWKSSFLDSALNKVFISCTVKKNFQYNGHEKGKAFNANKGYLNDSTSRLGRTMEGAKISSGVPLVSGRHTYYRKKMVRKELCSSPSVSLDDSGPGEQHVAKLRKHASAVLETAEVKITSTNSGKTRMIRRKKDLFDEGRSSPVNGTLHSDQSSLKNKSSRKVLKSSCTVQNDVLDVIKSNEKRLSTSIDNSVGMRKGVRSGCEGTIQGKTTGHSSRQVLNAKSTVSKSKRKHLLEMDDMPSLQPGKVLKISNGPKQGASKQVTTARKNSAKSKPLDLCPRSDGCARTSIDGWEWHKWSQKATPAYRARVRGLPCMQNNFTDSDNNVTQLSNGKGLSARTNRVKLRSLLAFADGDLLKVPQLKARKKNLCFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRERQYEKMGIGGSYLFRIDDDYVVDATKRGGIARFINHSCEPNCYTKVISFEGQKKIFIYAKRHIASGEEITYNYKFPLEEKKITCNCGSRKQDNQ 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0616 1256 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 81 1252 IPR044570 GO:0042800|GO:0051568
Lal3g0616 1256 Pfam SET domain 1131 1235 IPR001214 GO:0005515
Lal3g0616 1256 MobiDBLite consensus disorder prediction 996 1028 - -
Lal3g0616 1256 ProSiteProfiles SET domain profile. 1119 1236 IPR001214 GO:0005515
Lal3g0616 1256 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 81 1252 - -
Lal3g0616 1256 ProSiteProfiles GYF domain profile. 275 325 IPR003169 GO:0005515
Lal3g0616 1256 SMART set_7 1119 1242 IPR001214 GO:0005515
Lal3g0616 1256 Gene3D SET domain 1061 1256 IPR046341 -
Lal3g0616 1256 Gene3D - 264 338 IPR035445 -
Lal3g0616 1256 SUPERFAMILY SET domain 1114 1251 IPR046341 -
Lal3g0616 1256 MobiDBLite consensus disorder prediction 1007 1023 - -
Lal3g0616 1256 MobiDBLite consensus disorder prediction 886 912 - -
Lal3g0616 1256 CDD SET_SETD1 1107 1252 - -
Lal3g0616 1256 MobiDBLite consensus disorder prediction 959 977 - -
Lal3g0616 1256 MobiDBLite consensus disorder prediction 895 912 - -
Lal3g0616 1256 SUPERFAMILY GYF domain 269 325 IPR035445 -
Lal3g0616 1256 MobiDBLite consensus disorder prediction 959 979 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0616 Lal-Chr3 4734639 4754270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0616 1125 1248 C2H2 Transcription Factor Family AT2G23740 37.671 4.17e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal3g0616 SET 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0616 - - lang:109334426 1872.83