Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0613 ATGGCGACAACGTCGGTGGTGCCGGCGAACCGGCGGAGGGCGGCGTTGCAACCGGAGGACGCTGATTTTGAGACGACGGAGGGAGTTAAGGCGATAGGGAGCTTCGAAGAAATGGGAATAAAAGATGATTTGCTACGAGGGATTTACCAATACGGTTTCGAGAAGCCTTCTGCTATTCAGCAAAGGGCCGTGACGCCAATCATACAGGGCCGTGACGTCATCGCTCAGGCTCAGTCCGGTACCGGAAAAAGTTCCATGATTGCACTCACTGTATGCCAGATTGTTGATACCTCCGTTCGAGAGGTGCAAGCTTTAATAGTGTCGCCTACAAGGGAACTGGCTTCACAGACTGAAAAGGTTATATTGGCTATTGGTGACTTCATAAATATACAAGCACATGCATGCGTTGGTGGTAAAAGTGTGGGAGAAGATATAAGGAAGCTTGAGTATGGAGTACATGTGGTATCTGGAACTCCAGGCCGAGTTTGTGACATGATCAAAAGGAGAACATTGCGCACAAGAGCTATTAAGTTGCTAGTTCTGGATGAATCTGATGAAATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACCAGACCTTCAGGTGGTGTTGATTTCTGCTACCCTTCCTCATGAAATACTGGAGATAACAAATAAGTTCATGACAGATCCAGTAAGAATCCTTGTAAAACGTGATGAATTGACGTTGGAGGGTATCAAGCAATTTTTTGTTGCTGTCGAGAGAGAGGAATGGAAGTTTGATACTCTATGTGATCTTTATGATACTCTCACTATCACTCAAGCTGTTATATTCTGTAACACTAAACGAAAGGTGGACTGGTTAACTGAAAAAATGCGTAACAACAATTTCACCGTCTCATCAATGCATGGAGACATGCCTCAGAAAGAAAGAGATGCAATTATGGCAGAGTTTCGTGCTGGTACAACCCGTGTACTAATAACTACAGATGTTTGGGCTCGTGGACTTGATGTTTCTCTAGTTATCAACTATGACCTTCCAAACAATCGAGAGCTTTACATTCATCGAATTGGACGCTCTGGACGTTTTGGACGCAAGGGTGTTGCAATAAACTTTGTTAAGAGTGATGATATCAAGATCTTGAGAGATATTGAGCAATATTACAGTACCCAGATTGATGAAATGCCAATGAACGTTGCTGATCTTATATGA 1212 0.4323 MATTSVVPANRRRAALQPEDADFETTEGVKAIGSFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKSSMIALTVCQIVDTSVREVQALIVSPTRELASQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMAEFRAGTTRVLITTDVWARGLDVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0613 403 CDD SF2_C_DEAD 246 373 - -
Lal3g0613 403 SMART ultradead3 52 249 IPR014001 -
Lal3g0613 403 Gene3D - 238 403 IPR027417 -
Lal3g0613 403 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 33 61 IPR014014 GO:0003724
Lal3g0613 403 SMART helicmild6 286 364 IPR001650 -
Lal3g0613 403 CDD DEADc_EIF4AIII_DDX48 35 235 - -
Lal3g0613 403 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 245 403 IPR001650 -
Lal3g0613 403 PANTHER BNAC03G41130D PROTEIN 20 396 - -
Lal3g0613 403 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 20 396 - -
Lal3g0613 403 Pfam DEAD/DEAH box helicase 58 220 IPR011545 GO:0003676|GO:0005524
Lal3g0613 403 Pfam Helicase conserved C-terminal domain 259 364 IPR001650 -
Lal3g0613 403 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 234 IPR014001 -
Lal3g0613 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 386 IPR027417 -
Lal3g0613 403 Gene3D - 19 237 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0613 Lal-Chr3 4691949 4697131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0613 23 403 Eukaryotic Initiation Factors Gene Family AT3G19760 87.500 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0613 K13025 - gmx:100800020 766.918