Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0605 ATGCAGTGGGACAGCGATTCCGATCTCAGCGCCGACGAAGACGACGCCGCGTCCTTCATCTTCAACCATGACCTAAACGATGTTGATGGACCTCTTCCTATTCCTTTCCCTCTCCAAACGGCGCCGTATGCTTTCGTTGTCACCGACGCCGTCGATCCCGATCACCCTATCATTTACGTCAATACCGTCTTCGAGATGCTCACTGGATACCGTGCCGAGGAAGTACTCGGTCGTAACTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCAACAGTAATTTCTGAAATTCGAAGATGCCTCGAGGAAGGGGTTGAATTCCTAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCGGCTGACACCTATATTCGGAGATGATGAGATTACTCATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCTGTTCCAGGTTCTGTAATTAAGGAATCTGTTAAATCATCAGATCGGTTTCGTTCTGTGCTTTCCTCGTTACATCCTCTTCCAGTAGGGGACCGTAATGTGACTCGTGGAGTTTGTGGGATATTTCAAATGAGTGACGAGGTAATTTCTCTCAAGATACTTGCTCGCTTAACTCCAAGAGATATTGCATCTGTTGGTTCTGTCTGTAGGCGATTGTATGAGCTAACAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTTGCAAGGGAACTGACCACTCTTGAAGCAGCAGCTTGGGGCAAACTGACTGTTGGAGGAGCTGTTGAACCCTCCCGCTGTAACTTTAGTGCTTGTGCTGTTGGTAATAGAGTTGTCCTATTTGGTGGGGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAATTCTACTAATCCTGAGTGGCAACATGTCCAGGTGAGCTCTCCTCCTCCTGGTCGTTGGGGCCACACACTTTCATGTGTTAATGGTTCTCATTTGGTTCTATTTGGAGGCTGTGGAACACAAGGCTTGCTCAATGATGTGTTTGTTCTCGATCTGGATGCACAGCCTGCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCAAGATCATGGCATAGCTCCTGTACTCTTGATGGTACCAAGTTGATAGTGTCTGGTGGCTGTGCTGATTCTGGAGTACTCTTGAGTGATACTTTCCTCCTTGATTTGTCAATGGAGAAACCTATCTGGAGAGAGATACCAGTGGCATGGACTCCACCTTCTCGTCTGGGCCACACCCTATCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCTCTGCGTTTTCGTTCCAGTGATGTATTCATGATGGATTTAAGTGAGGAGGAACCATGCTGGAGATGTGTAACAGGGAGTGGAATGCCTGGTGCTGGAAATCCTGGAGGCACAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTTAGTCTTCCAGGTGGGAGAATTCTGATATTCGGCGGGTCTGTTGCAGGCCTACATTCTGCCTCCCAGCTTTACATCCTTGATCCGACTGATGAGAAGCCTACATGGAGAATCCTAAATGTACCAGGATGCCCTCCAAGATTTGCCTGGGGACATAGTACATGTATTGTTGGAGGGACAAGAGCTATTGTATTGGGTGGTCAAACTGGGGAGGAATGGGTGCTAGGTGACCTCCATGAACTTTCGTTGGCAAGTTCTGCCATATAG 1845 0.4791 MQWDSDSDLSADEDDAASFIFNHDLNDVDGPLPIPFPLQTAPYAFVVTDAVDPDHPIIYVNTVFEMLTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVISEIRRCLEEGVEFLGELLNFRKDGSPLMNRLRLTPIFGDDEITHVIGIQFFTEANIDLGPVPGSVIKESVKSSDRFRSVLSSLHPLPVGDRNVTRGVCGIFQMSDEVISLKILARLTPRDIASVGSVCRRLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWGKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSTNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVLFGGCGTQGLLNDVFVLDLDAQPATWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPIWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFMMDLSEEEPCWRCVTGSGMPGAGNPGGTAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGCPPRFAWGHSTCIVGGTRAIVLGGQTGEEWVLGDLHELSLASSAI 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0605 614 Pfam Kelch motif 522 569 IPR011498 GO:0005515
Lal3g0605 614 Pfam Kelch motif 455 506 IPR011498 GO:0005515
Lal3g0605 614 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 613 - -
Lal3g0605 614 Pfam Galactose oxidase, central domain 298 348 - -
Lal3g0605 614 ProSiteProfiles PAS repeat profile. 50 112 IPR000014 -
Lal3g0605 614 Pfam Galactose oxidase, central domain 362 409 - -
Lal3g0605 614 SUPERFAMILY F-box domain 194 263 IPR036047 GO:0005515
Lal3g0605 614 SUPERFAMILY PYP-like sensor domain (PAS domain) 42 151 IPR035965 -
Lal3g0605 614 Gene3D - 202 281 - -
Lal3g0605 614 Gene3D - 479 612 IPR015915 GO:0005515
Lal3g0605 614 Gene3D - 282 478 IPR015915 GO:0005515
Lal3g0605 614 SUPERFAMILY Galactose oxidase, central domain 293 599 IPR011043 -
Lal3g0605 614 TIGRFAM sensory_box: PAS domain S-box protein 51 150 IPR000014 -
Lal3g0605 614 Pfam F-box-like 210 248 IPR001810 GO:0005515
Lal3g0605 614 Pfam PAS domain 44 151 IPR000014 -
Lal3g0605 614 Gene3D PAS domain 34 162 - -
Lal3g0605 614 PANTHER ADAGIO PROTEIN 1-LIKE 1 613 - -
Lal3g0605 614 CDD PAS 50 143 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0605 Lal-Chr3 4620379 4626299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0605 27 245 AGC Kinase Gene Family AT5G58140 25.000 2.14e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0605 K12115 - gmx:100802828 1122.84