Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0598 ATGGCGGCTTATGCGATTAAACCTACGAAGCCTGGTTTGGAGGAACCTTCAGAGCTGATCCATAAGATTAGGATCACCCTTTCATCCAAGAACGTCAAAAACCTCGAGAAGGTTTGTACTGATTTGGTTCGTGGTGCAAAGGATAAGCATCTCAGAGTTAAGGGACCTGTTAGGATGCCAACTAAAGTTCTCAACATTACTACAAGGAAAACCCCTTGTGGAGAAGGTACCAATACATGGGATAGGTTTGAGCTACGTGTGCACAAGAGAGTCATTGATCTCTACAGTTCCGCTGATGTGGTCAAGCAGATTACCTCAATCACAATTGAACCCGGTGTCGAGGTTGAGGTGACCATTGCAGATGCTTGA 369 0.4526 MAAYAIKPTKPGLEEPSELIHKIRITLSSKNVKNLEKVCTDLVRGAKDKHLRVKGPVRMPTKVLNITTRKTPCGEGTNTWDRFELRVHKRVIDLYSSADVVKQITSITIEPGVEVEVTIADA 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0598 122 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lal3g0598 122 PRINTS Ribosomal protein S10 family signature 57 72 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lal3g0598 122 PRINTS Ribosomal protein S10 family signature 79 93 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lal3g0598 122 SMART Ribosomal_S10_2 24 118 IPR027486 -
Lal3g0598 122 Pfam Ribosomal protein S10p/S20e 24 118 IPR027486 -
Lal3g0598 122 Gene3D Ribosomal protein S10 domain 7 121 IPR036838 -
Lal3g0598 122 PANTHER RIBOSOMAL PROTEIN S10-RELATED 1 121 - -
Lal3g0598 122 SUPERFAMILY Ribosomal protein S10 22 119 IPR036838 -
Lal3g0598 122 TIGRFAM uS10_euk_arch: ribosomal protein uS10 21 119 IPR005729 GO:0003735|GO:0006412|GO:0015935
Lal3g0598 122 Hamap 30S ribosomal protein S10 [rpsJ]. 20 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lal3g0598 122 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 121 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0598 Lal-Chr3 4564868 4566834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0598 1 122 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 88.525 4.44e-75 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0598 K02969 - pvy:116112228 226.098