Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0580 ATGTCTTCTTCTACAAGCAATGAGGTCACTATCCTCTCAAAACGCACCGTTTTCCCTGAACAAAAATCCACTCTCTCAGACCTCAAGCTTTCAATATCAGATCTCAACATGATTTGCTGCCACTACATCCAAAAGGGATGTCTCTTCACTAATCCTTCATTTCCCTCTCACACTCTCATCCCTCTCCTCACTCACTCACTCTCACGCGCTCTTTCCATCTTTCCCCCACTCGCTGGCCGTTTAGTAACCGACTCCGACGGTTACATTTACATTACTTCTAACGACGCCGGCGTTGATTTCGTCCACGCCACCGCCACCGAACGTCGCATCGCTGATCTCTTGTCCCCAGCCGATATTCCTCATTTCTTCAAGGAACTGTTTCCCTATGAGAAGAAACTCAACCACGACGCACATTTTTCTCCGATCATGGCCGTTCAGGTAACTGAACTCGCTGACGGTGTCTTTATCGGCTGCTCTGTCTGCCACGCTGTCGTCGATGGAACTTCCTTATGGAACTTCTTTAACATCTTCGCTGAAGTTACCAGAGGGGTTACGAGTGTTTCAAAGCTCCCGGACTTTCGCCGGGAAACTATTCTGGTCTCGAATGCAGTTCTCCGGTTGCCGGAAGGTGAACTCAAGGTGGCTTTCAACGCTGACGAACCGTTGCGTGAGAGAATTTTCAGCTTCAGCTACGCTTCCCTTCAAAAACTGAAAGCCGTAGTGAACCACCAGTCACTGCCGGAGAATGTTGACGTTGAGTTGATAGGGAAACAGAGCAACGATACAAACGTAAAACCAGCTACGAGAAACAAAACGGTAGAGATTTCGTCGTTTCAATCTTTATGTGCGTTGATGTGGCGTGCAGTGACACGTGCACGGAAGCTTCCAGAAACGAAAACGACGACGTTTCGAATGGCAGTGAACATTCGCCACAGAATAGAGCCAAAGTTAAGTAACTACTACTTCGGGAACGCAATTCAAGGCATAGCGACAAGCGCTTCCGCGCGTGACGTGTTATCAAATGATCTACGTTGGTGTGCGGAGCAGCTGAACAAGAACGTGAAGGCGCACGATAGCGCTACGGTGCGACGAGAAATAGAGGATTGGGAGCGTGAACCGAAGTGTTTCGCGCTTGGAAACAAAGATGGTGCAACGATGCAAATGGGGAGTTCACCGAGATTTCCGATGTATGATAATGATTTCGGGTGGGGAAGGCCTGTGGCGGTGCGGAGTGGTGCAGCGAATAAGTTTGATGGGAAGATGTCGGCGTTTCCGGGGAGGGAAGGCGGTGGCTCCGTCGATTTGGAGGTGGTTTTGGCGCCAGAGACGATGGCGGGGATTGAGAATGATCCTGAGTTCATGCTTTATGCATCTAGTTGA 1380 0.4964 MSSSTSNEVTILSKRTVFPEQKSTLSDLKLSISDLNMICCHYIQKGCLFTNPSFPSHTLIPLLTHSLSRALSIFPPLAGRLVTDSDGYIYITSNDAGVDFVHATATERRIADLLSPADIPHFFKELFPYEKKLNHDAHFSPIMAVQVTELADGVFIGCSVCHAVVDGTSLWNFFNIFAEVTRGVTSVSKLPDFRRETILVSNAVLRLPEGELKVAFNADEPLRERIFSFSYASLQKLKAVVNHQSLPENVDVELIGKQSNDTNVKPATRNKTVEISSFQSLCALMWRAVTRARKLPETKTTTFRMAVNIRHRIEPKLSNYYFGNAIQGIATSASARDVLSNDLRWCAEQLNKNVKAHDSATVRREIEDWEREPKCFALGNKDGATMQMGSSPRFPMYDNDFGWGRPVAVRSGAANKFDGKMSAFPGREGGGSVDLEVVLAPETMAGIENDPEFMLYASS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0580 459 Gene3D - 6 205 IPR023213 -
Lal3g0580 459 Gene3D - 211 449 IPR023213 -
Lal3g0580 459 Pfam Transferase family 8 454 - -
Lal3g0580 459 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 7 457 - -
Lal3g0580 459 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 7 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0580 Lal-Chr3 4381622 4383001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0580 8 448 Monolignol Biosynthesis Gene Families AT5G48930 28.634 1.76e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0580 - - cam:101506439 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0580 3 4381622 4383001 Lal3g0580 3 4381622 4383001 ECH
Lal3g0580 3 4381622 4383001 Lal18g1360 18 15974585 15976030 LSH
Lal18g1360 18 15974585 15976030 Lal3g0580 3 4381622 4383001 PCT
Lal22g0239 22 1479815 1481257 Lal3g0580 3 4381622 4383001 PCT