Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0575 ATGTATCCATCTTGTTTCATATCAAGTTCAAATGGGTTTGTCCAAGAGAGCCACAACACAGAATGGACTAAAGAAGAGAATAAGAATTTTGAAAGTGCCCTTGCCATATATGACAAGGACACCCCGGACCGGTGGCTAAAGGTTGCAGCCACTATCCCCGGGAAGACTGTGTTTGATGTGATCAAGCAATATAGGGAATTGGAAGAAGATGTTAGTGAAATAGAAGAAGGGCATGTTCCGATTCCGGGATATCTTGAATCTTCTTTCATGTTTGAGAACCATAGTTATGATGCATGCAGAAAGAGGGCTGCAACAACTGTGAAGGGTTATGATCAGGAGAGAAAGAAAGGGGTCCCTTGGACTGAAGAAGAACACAAACGTTTTCTGATGGGACTTCTAAAGTATGGGAAAGGGGACTGGAGAAATATTTCGCGCAATTTTGTTTTCACGAAAACACCAACACAAGTGGCAAGCCATGCTCAAAAGTACTACATAAGGCAAAATGTTTCTGGAGGGAAAGAGAATAAAAGGAGACCAAGTATCCATGACATAACATTTGTTAATCTAGCAGAAACTACATCACTGGATAAGGACATACCCCTTGTATTCAAAGACTCTTATCTGCCTTCGCCGCAGCCGAAACTTAGTAGCATGCAAAAAGCACAACTGGAATGGATTAATAACAACTATGATGAGTCAAACATGGTTTCCAACCCAAAGTGTGAGGATATGTTCATGCCATCTTCATCGGTTATTACTTCCAAGGTCCTGAAATTGCAAGGGCAGGATATATATGACTGTGCTTTCCATGAGGTTCATGCCAAGCAAAAAATTCAAAGTTTCAGGACTGATTCTAGAAGCATCAATAAGGAAGCTATTTTCAGTATTCATGCACTGTAA 900 0.4078 MYPSCFISSSNGFVQESHNTEWTKEENKNFESALAIYDKDTPDRWLKVAATIPGKTVFDVIKQYRELEEDVSEIEEGHVPIPGYLESSFMFENHSYDACRKRAATTVKGYDQERKKGVPWTEEEHKRFLMGLLKYGKGDWRNISRNFVFTKTPTQVASHAQKYYIRQNVSGGKENKRRPSIHDITFVNLAETTSLDKDIPLVFKDSYLPSPQPKLSSMQKAQLEWINNNYDESNMVSNPKCEDMFMPSSSVITSKVLKLQGQDIYDCAFHEVHAKQKIQSFRTDSRSINKEAIFSIHAL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0575 299 SMART sant 116 166 IPR001005 -
Lal3g0575 299 SMART sant 18 70 IPR001005 -
Lal3g0575 299 SUPERFAMILY Homeodomain-like 20 75 IPR009057 -
Lal3g0575 299 CDD SANT 21 67 IPR001005 -
Lal3g0575 299 Gene3D - 118 169 - -
Lal3g0575 299 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 115 167 IPR006447 GO:0003677
Lal3g0575 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 168 IPR017930 -
Lal3g0575 299 Pfam Myb-like DNA-binding domain 119 163 IPR001005 -
Lal3g0575 299 Gene3D - 14 81 - -
Lal3g0575 299 ProSiteProfiles Myb-like domain profile. 112 164 IPR001005 -
Lal3g0575 299 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 280 - -
Lal3g0575 299 ProSiteProfiles SANT domain profile. 120 168 IPR017884 -
Lal3g0575 299 CDD SANT 119 163 IPR001005 -
Lal3g0575 299 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 280 IPR043363 -
Lal3g0575 299 SUPERFAMILY Homeodomain-like 114 168 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0575 Lal-Chr3 4350942 4353198 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal3g0575 Myb_DNA-binding 3.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0575 - - gmx:778039 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2221 1 24169617 24171443 Lal3g0575 3 4350942 4353198 ECH
Lal2g1901 2 21263653 21266258 Lal3g0575 3 4350942 4353198 ECH
Lal22g0370 22 2383737 2386250 Lal3g0575 3 4350942 4353198 ECH
Lal5g0915 5 10961450 10963494 Lal3g0575 3 4350942 4353198 ECH
Lal3g0575 3 4350942 4353198 Lal3g0575 3 4350942 4353198 ECH
Lal3g0575 3 4350942 4353198 Lal22g0242 22 1511667 1513969 PCT
Lal22g0242 22 1511667 1513969 Lal3g0575 3 4350942 4353198 PCT